JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1irqa_.name2015-04-17 18:24 0 Job name flag file
[ ]jp_CPbC0BN.align2015-04-17 20:22 254 PSIBLAST alignment in FASTA format
[TXT]jp_CPbC0BN.als2015-04-17 20:22 1.6KAlscript command file for PS/PDF output
[ ]jp_CPbC0BN.blast.gz2015-04-17 20:22 2.0KCompressed PSIBLAST output file
[TXT]jp_CPbC0BN.coils.csv2015-04-17 20:22 318 COILS output in CSV format
[ ]jp_CPbC0BN.coilseq.lupas_142015-04-17 20:22 2.0KCOILS output, window length 14
[ ]jp_CPbC0BN.coilseq.lupas_212015-04-17 20:22 2.0KCOILS output, window length 21
[ ]jp_CPbC0BN.coilseq.lupas_282015-04-17 20:22 2.0KCOILS output, window length 28
[ ]jp_CPbC0BN.concise2015-04-17 20:22 2.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_CPbC0BN.concise.blc2015-04-17 20:22 1.0KBLC format prediction and alignment data
[ ]jp_CPbC0BN.concise.fasta2015-04-17 20:22 844 Prediction: coiled-coil, solvent, alignment
[ ]jp_CPbC0BN.concise.pdf2015-04-17 20:22 8.3KPDF prediction and alignment data
[ ]jp_CPbC0BN.concise.ps2015-04-17 20:22 112KPrediction: coiled-coil, solvent, alignment
[ ]jp_CPbC0BN.fasta2015-04-17 20:18 61 Input query sequence in FASTA format
[ ]jp_CPbC0BN.full_MSA.fasta2015-04-17 20:22 657 Full MSA before JPred filters in FASTA
[TXT]jp_CPbC0BN.full_MSA.fasta.noGaps.html2015-04-17 20:22 1.9KFull MSA before JPred filters in FASTA
[TXT]jp_CPbC0BN.full_MSA.fasta.withGaps.html2015-04-17 20:22 1.9KFull MSA before JPred filters in FASTA
[ ]jp_CPbC0BN.hmm2015-04-17 20:22 9.0KHHMer2 profile of the alignment
[TXT]jp_CPbC0BN.html2015-04-17 20:22 7.0KHTML prediction and alignment data
[ ]jp_CPbC0BN.input2015-04-17 18:24 55 Raw input data for analysis
[ ]jp_CPbC0BN.jalview2015-04-17 20:22 1.8KJalview annotation file for alignment
[ ]jp_CPbC0BN.jnet2015-04-17 20:22 1.8KJnet secondary structure output
[TXT]jp_CPbC0BN.profile2015-04-17 20:20 8.1KPSIBLAST profile from alignment
[ ]jp_CPbC0BN.pssm2015-04-17 20:22 10KPSIBLAST PSSM for Jnet
[TXT]jp_CPbC0BN.results.html2016-02-15 12:17 30KJPred results page
[TXT]jp_CPbC0BN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_CPbC0BN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_CPbC0BN.seq2015-04-17 18:24 61 Sequence data file
[TXT]jp_CPbC0BN.simple.html2015-04-17 20:22 1.0KBrief HTML: sequence and prediction only
[TXT]jp_CPbC0BN.svg.html2015-04-17 20:22 22KJalview SVG summary of results
[ ]jp_CPbC0BN.tar.gz2015-04-17 20:22 26KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.