JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l0sa_.name2015-04-17 18:26 0 Job name flag file
[ ]jp_13ODphf.align2015-04-17 20:23 1.8KPSIBLAST alignment in FASTA format
[TXT]jp_13ODphf.als2015-04-17 20:23 1.8KAlscript command file for PS/PDF output
[ ]jp_13ODphf.blast.gz2015-04-17 20:23 3.7KCompressed PSIBLAST output file
[TXT]jp_13ODphf.coils.csv2015-04-17 20:23 558 COILS output in CSV format
[ ]jp_13ODphf.coilseq.lupas_142015-04-17 20:23 3.7KCOILS output, window length 14
[ ]jp_13ODphf.coilseq.lupas_212015-04-17 20:23 3.7KCOILS output, window length 21
[ ]jp_13ODphf.coilseq.lupas_282015-04-17 20:23 3.7KCOILS output, window length 28
[ ]jp_13ODphf.concise2015-04-17 20:23 7.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_13ODphf.concise.blc2015-04-17 20:23 3.1KBLC format prediction and alignment data
[ ]jp_13ODphf.concise.fasta2015-04-17 20:23 2.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_13ODphf.concise.pdf2015-04-17 20:23 17KPDF prediction and alignment data
[ ]jp_13ODphf.concise.ps2015-04-17 20:23 315KPrediction: coiled-coil, solvent, alignment
[ ]jp_13ODphf.fasta2015-04-17 20:20 102 Input query sequence in FASTA format
[ ]jp_13ODphf.full_MSA.fasta2015-04-17 20:23 4.7KFull MSA before JPred filters in FASTA
[TXT]jp_13ODphf.full_MSA.fasta.noGaps.html2015-04-17 20:23 5.3KFull MSA before JPred filters in FASTA
[TXT]jp_13ODphf.full_MSA.fasta.withGaps.html2015-04-17 20:23 9.0KFull MSA before JPred filters in FASTA
[ ]jp_13ODphf.hmm2015-04-17 20:23 17KHHMer2 profile of the alignment
[TXT]jp_13ODphf.html2015-04-17 20:23 12KHTML prediction and alignment data
[ ]jp_13ODphf.input2015-04-17 18:26 95 Raw input data for analysis
[ ]jp_13ODphf.jalview2015-04-17 20:23 2.5KJalview annotation file for alignment
[ ]jp_13ODphf.jnet2015-04-17 20:23 3.3KJnet secondary structure output
[TXT]jp_13ODphf.profile2015-04-17 20:22 14KPSIBLAST profile from alignment
[ ]jp_13ODphf.pssm2015-04-17 20:23 19KPSIBLAST PSSM for Jnet
[TXT]jp_13ODphf.results.html2016-02-15 12:17 44KJPred results page
[TXT]jp_13ODphf.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_13ODphf.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_13ODphf.seq2015-04-17 18:26 102 Sequence data file
[TXT]jp_13ODphf.simple.html2015-04-17 20:23 1.1KBrief HTML: sequence and prediction only
[TXT]jp_13ODphf.svg.html2015-04-17 20:23 36KJalview SVG summary of results
[ ]jp_13ODphf.tar.gz2015-04-17 20:23 45KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.