JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:30 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r0va3.name2015-04-17 17:19 0 Job name flag file
[ ]jp_1O90lsc.align2015-04-17 20:30 2.8KPSIBLAST alignment in FASTA format
[TXT]jp_1O90lsc.als2015-04-17 20:30 2.3KAlscript command file for PS/PDF output
[ ]jp_1O90lsc.blast.gz2015-04-17 20:30 5.0KCompressed PSIBLAST output file
[TXT]jp_1O90lsc.coils.csv2015-04-17 20:30 480 COILS output in CSV format
[ ]jp_1O90lsc.coilseq.lupas_142015-04-17 20:30 3.1KCOILS output, window length 14
[ ]jp_1O90lsc.coilseq.lupas_212015-04-17 20:30 3.1KCOILS output, window length 21
[ ]jp_1O90lsc.coilseq.lupas_282015-04-17 20:30 3.1KCOILS output, window length 28
[ ]jp_1O90lsc.concise2015-04-17 20:30 8.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_1O90lsc.concise.blc2015-04-17 20:30 4.0KBLC format prediction and alignment data
[ ]jp_1O90lsc.concise.fasta2015-04-17 20:30 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_1O90lsc.concise.pdf2015-04-17 20:30 26KPDF prediction and alignment data
[ ]jp_1O90lsc.concise.ps2015-04-17 20:30 448KPrediction: coiled-coil, solvent, alignment
[ ]jp_1O90lsc.fasta2015-04-17 18:25 89 Input query sequence in FASTA format
[ ]jp_1O90lsc.full_MSA.fasta2015-04-17 20:30 5.7KFull MSA before JPred filters in FASTA
[TXT]jp_1O90lsc.full_MSA.fasta.noGaps.html2015-04-17 20:30 7.6KFull MSA before JPred filters in FASTA
[TXT]jp_1O90lsc.full_MSA.fasta.withGaps.html2015-04-17 20:30 22KFull MSA before JPred filters in FASTA
[ ]jp_1O90lsc.hmm2015-04-17 20:30 14KHHMer2 profile of the alignment
[TXT]jp_1O90lsc.html2015-04-17 20:30 18KHTML prediction and alignment data
[ ]jp_1O90lsc.input2015-04-17 17:19 82 Raw input data for analysis
[ ]jp_1O90lsc.jalview2015-04-17 20:30 2.3KJalview annotation file for alignment
[ ]jp_1O90lsc.jnet2015-04-17 20:30 2.8KJnet secondary structure output
[TXT]jp_1O90lsc.profile2015-04-17 20:01 12KPSIBLAST profile from alignment
[ ]jp_1O90lsc.pssm2015-04-17 20:30 16KPSIBLAST PSSM for Jnet
[TXT]jp_1O90lsc.results.html2016-02-15 12:18 42KJPred results page
[TXT]jp_1O90lsc.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_1O90lsc.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_1O90lsc.seq2015-04-17 17:19 89 Sequence data file
[TXT]jp_1O90lsc.simple.html2015-04-17 20:30 1.3KBrief HTML: sequence and prediction only
[TXT]jp_1O90lsc.svg.html2015-04-17 20:30 34KJalview SVG summary of results
[ ]jp_1O90lsc.tar.gz2015-04-17 20:30 63KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.