JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1v8ca2.name2015-04-17 17:59 0 Job name flag file
[ ]jp_qM9liem.align2015-04-17 19:34 475 PSIBLAST alignment in FASTA format
[TXT]jp_qM9liem.als2015-04-17 19:34 2.0KAlscript command file for PS/PDF output
[ ]jp_qM9liem.blast.gz2015-04-17 19:34 2.0KCompressed PSIBLAST output file
[TXT]jp_qM9liem.coils.csv2015-04-17 19:34 498 COILS output in CSV format
[ ]jp_qM9liem.coilseq.lupas_142015-04-17 19:34 3.3KCOILS output, window length 14
[ ]jp_qM9liem.coilseq.lupas_212015-04-17 19:34 3.3KCOILS output, window length 21
[ ]jp_qM9liem.coilseq.lupas_282015-04-17 19:34 3.3KCOILS output, window length 28
[ ]jp_qM9liem.concise2015-04-17 19:34 4.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_qM9liem.concise.blc2015-04-17 19:34 1.7KBLC format prediction and alignment data
[ ]jp_qM9liem.concise.fasta2015-04-17 19:34 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_qM9liem.concise.pdf2015-04-17 19:34 12KPDF prediction and alignment data
[ ]jp_qM9liem.concise.ps2015-04-17 19:34 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_qM9liem.fasta2015-04-17 19:33 92 Input query sequence in FASTA format
[ ]jp_qM9liem.full_MSA.fasta2015-04-17 19:34 669 Full MSA before JPred filters in FASTA
[TXT]jp_qM9liem.full_MSA.fasta.noGaps.html2015-04-17 19:34 1.5KFull MSA before JPred filters in FASTA
[TXT]jp_qM9liem.full_MSA.fasta.withGaps.html2015-04-17 19:34 1.5KFull MSA before JPred filters in FASTA
[ ]jp_qM9liem.hmm2015-04-17 19:34 15KHHMer2 profile of the alignment
[TXT]jp_qM9liem.html2015-04-17 19:34 9.7KHTML prediction and alignment data
[ ]jp_qM9liem.input2015-04-17 17:59 85 Raw input data for analysis
[ ]jp_qM9liem.jalview2015-04-17 19:34 2.4KJalview annotation file for alignment
[ ]jp_qM9liem.jnet2015-04-17 19:34 2.9KJnet secondary structure output
[TXT]jp_qM9liem.profile2015-04-17 19:33 13KPSIBLAST profile from alignment
[ ]jp_qM9liem.pssm2015-04-17 19:34 17KPSIBLAST PSSM for Jnet
[TXT]jp_qM9liem.results.html2016-02-15 12:18 42KJPred results page
[TXT]jp_qM9liem.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_qM9liem.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_qM9liem.seq2015-04-17 17:59 92 Sequence data file
[TXT]jp_qM9liem.simple.html2015-04-17 19:34 1.2KBrief HTML: sequence and prediction only
[TXT]jp_qM9liem.svg.html2015-04-17 19:34 34KJalview SVG summary of results
[ ]jp_qM9liem.tar.gz2015-04-17 19:34 35KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.