JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vaja1.name2015-04-17 18:35 0 Job name flag file
[ ]jp_lLYnWH_.align2015-04-17 20:37 214KPSIBLAST alignment in FASTA format
[TXT]jp_lLYnWH_.als2015-04-17 20:37 2.9KAlscript command file for PS/PDF output
[ ]jp_lLYnWH_.blast.gz2015-04-17 20:37 1.2MCompressed PSIBLAST output file
[TXT]jp_lLYnWH_.coils.csv2015-04-17 20:37 1.2KCOILS output in CSV format
[ ]jp_lLYnWH_.coilseq.lupas_142015-04-17 20:37 8.5KCOILS output, window length 14
[ ]jp_lLYnWH_.coilseq.lupas_212015-04-17 20:37 8.5KCOILS output, window length 21
[ ]jp_lLYnWH_.coilseq.lupas_282015-04-17 20:37 8.5KCOILS output, window length 28
[ ]jp_lLYnWH_.concise2015-04-17 20:37 421KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLYnWH_.concise.blc2015-04-17 20:37 214KBLC format prediction and alignment data
[ ]jp_lLYnWH_.concise.fasta2015-04-17 20:37 216KPrediction: coiled-coil, solvent, alignment
[ ]jp_lLYnWH_.concise.pdf2015-04-17 20:38 1.4MPDF prediction and alignment data
[ ]jp_lLYnWH_.concise.ps2015-04-17 20:37 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_lLYnWH_.fasta2015-04-17 20:32 218 Input query sequence in FASTA format
[ ]jp_lLYnWH_.full_MSA.fasta2015-04-17 20:37 2.0MFull MSA before JPred filters in FASTA
[TXT]jp_lLYnWH_.full_MSA.fasta.noGaps.html2015-04-17 20:38 435KFull MSA before JPred filters in FASTA
[TXT]jp_lLYnWH_.full_MSA.fasta.withGaps.html2015-04-17 20:38 6.6MFull MSA before JPred filters in FASTA
[ ]jp_lLYnWH_.hmm2015-04-17 20:37 38KHHMer2 profile of the alignment
[TXT]jp_lLYnWH_.html2015-04-17 20:37 419KHTML prediction and alignment data
[ ]jp_lLYnWH_.input2015-04-17 18:35 210 Raw input data for analysis
[ ]jp_lLYnWH_.jalview2015-04-17 20:37 4.9KJalview annotation file for alignment
[ ]jp_lLYnWH_.jnet2015-04-17 20:37 7.4KJnet secondary structure output
[TXT]jp_lLYnWH_.profile2015-04-17 20:35 33KPSIBLAST profile from alignment
[ ]jp_lLYnWH_.pssm2015-04-17 20:37 44KPSIBLAST PSSM for Jnet
[TXT]jp_lLYnWH_.results.html2016-02-15 12:18 88KJPred results page
[TXT]jp_lLYnWH_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_lLYnWH_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_lLYnWH_.seq2015-04-17 18:35 218 Sequence data file
[TXT]jp_lLYnWH_.simple.html2015-04-17 20:37 1.5KBrief HTML: sequence and prediction only
[TXT]jp_lLYnWH_.svg.html2015-04-17 20:38 80KJalview SVG summary of results
[ ]jp_lLYnWH_.tar.gz2015-04-17 20:38 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.