JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1vk1a_.name2015-04-17 16:09 0 Job name flag file
[ ]jp_jYDpykY.align2015-04-17 17:34 193KPSIBLAST alignment in FASTA format
[TXT]jp_jYDpykY.als2015-04-17 17:34 3.1KAlscript command file for PS/PDF output
[ ]jp_jYDpykY.blast.gz2015-04-17 17:32 7.7MCompressed PSIBLAST output file
[TXT]jp_jYDpykY.coils.csv2015-04-17 17:34 1.4KCOILS output in CSV format
[ ]jp_jYDpykY.coilseq.lupas_142015-04-17 17:34 9.7KCOILS output, window length 14
[ ]jp_jYDpykY.coilseq.lupas_212015-04-17 17:34 9.7KCOILS output, window length 21
[ ]jp_jYDpykY.coilseq.lupas_282015-04-17 17:34 9.7KCOILS output, window length 28
[ ]jp_jYDpykY.concise2015-04-17 17:34 382KPrediction: coiled-coil, solvent, alignment
[ ]jp_jYDpykY.concise.blc2015-04-17 17:34 193KBLC format prediction and alignment data
[ ]jp_jYDpykY.concise.fasta2015-04-17 17:34 195KPrediction: coiled-coil, solvent, alignment
[ ]jp_jYDpykY.concise.pdf2015-04-17 17:35 1.3MPDF prediction and alignment data
[ ]jp_jYDpykY.concise.ps2015-04-17 17:35 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_jYDpykY.fasta2015-04-17 16:34 248 Input query sequence in FASTA format
[ ]jp_jYDpykY.full_MSA.fasta2015-04-17 17:33 27MFull MSA before JPred filters in FASTA
[TXT]jp_jYDpykY.full_MSA.fasta.noGaps.html2015-04-17 17:36 3.2MFull MSA before JPred filters in FASTA
[TXT]jp_jYDpykY.full_MSA.fasta.withGaps.html2015-04-17 17:36 75MFull MSA before JPred filters in FASTA
[ ]jp_jYDpykY.hmm2015-04-17 17:34 44KHHMer2 profile of the alignment
[TXT]jp_jYDpykY.html2015-04-17 17:34 363KHTML prediction and alignment data
[ ]jp_jYDpykY.input2015-04-17 16:09 239 Raw input data for analysis
[ ]jp_jYDpykY.jalview2015-04-17 17:34 5.5KJalview annotation file for alignment
[ ]jp_jYDpykY.jnet2015-04-17 17:34 8.5KJnet secondary structure output
[TXT]jp_jYDpykY.profile2015-04-17 17:22 37KPSIBLAST profile from alignment
[ ]jp_jYDpykY.pssm2015-04-17 17:34 50KPSIBLAST PSSM for Jnet
[TXT]jp_jYDpykY.results.html2016-02-15 12:18 101KJPred results page
[TXT]jp_jYDpykY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_jYDpykY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_jYDpykY.seq2015-04-17 16:09 248 Sequence data file
[TXT]jp_jYDpykY.simple.html2015-04-17 17:34 1.6KBrief HTML: sequence and prediction only
[TXT]jp_jYDpykY.svg.html2015-04-17 17:36 93KJalview SVG summary of results
[ ]jp_jYDpykY.tar.gz2015-04-17 17:36 16MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.