JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:36 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d1y02a1.name2015-04-17 17:24 0 Job name flag file
[ ]jp_pCkdbb0.align2015-04-17 18:36 2.6KPSIBLAST alignment in FASTA format
[TXT]jp_pCkdbb0.als2015-04-17 18:36 1.6KAlscript command file for PS/PDF output
[ ]jp_pCkdbb0.blast.gz2015-04-17 18:36 11KCompressed PSIBLAST output file
[TXT]jp_pCkdbb0.coils.csv2015-04-17 18:36 294 COILS output in CSV format
[ ]jp_pCkdbb0.coilseq.lupas_142015-04-17 18:36 1.8KCOILS output, window length 14
[ ]jp_pCkdbb0.coilseq.lupas_212015-04-17 18:36 1.8KCOILS output, window length 21
[ ]jp_pCkdbb0.coilseq.lupas_282015-04-17 18:36 1.8KCOILS output, window length 28
[ ]jp_pCkdbb0.concise2015-04-17 18:36 6.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_pCkdbb0.concise.blc2015-04-17 18:36 3.3KBLC format prediction and alignment data
[ ]jp_pCkdbb0.concise.fasta2015-04-17 18:36 3.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_pCkdbb0.concise.pdf2015-04-17 18:36 22KPDF prediction and alignment data
[ ]jp_pCkdbb0.concise.ps2015-04-17 18:36 343KPrediction: coiled-coil, solvent, alignment
[ ]jp_pCkdbb0.fasta2015-04-17 18:32 57 Input query sequence in FASTA format
[ ]jp_pCkdbb0.full_MSA.fasta2015-04-17 18:36 12KFull MSA before JPred filters in FASTA
[TXT]jp_pCkdbb0.full_MSA.fasta.noGaps.html2015-04-17 18:36 32KFull MSA before JPred filters in FASTA
[TXT]jp_pCkdbb0.full_MSA.fasta.withGaps.html2015-04-17 18:36 37KFull MSA before JPred filters in FASTA
[ ]jp_pCkdbb0.hmm2015-04-17 18:36 8.3KHHMer2 profile of the alignment
[TXT]jp_pCkdbb0.html2015-04-17 18:36 17KHTML prediction and alignment data
[ ]jp_pCkdbb0.input2015-04-17 17:24 51 Raw input data for analysis
[ ]jp_pCkdbb0.jalview2015-04-17 18:36 1.7KJalview annotation file for alignment
[ ]jp_pCkdbb0.jnet2015-04-17 18:36 1.7KJnet secondary structure output
[TXT]jp_pCkdbb0.profile2015-04-17 18:35 7.5KPSIBLAST profile from alignment
[ ]jp_pCkdbb0.pssm2015-04-17 18:36 9.5KPSIBLAST PSSM for Jnet
[TXT]jp_pCkdbb0.results.html2016-02-15 12:19 29KJPred results page
[TXT]jp_pCkdbb0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_pCkdbb0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_pCkdbb0.seq2015-04-17 17:24 57 Sequence data file
[TXT]jp_pCkdbb0.simple.html2015-04-17 18:36 1.0KBrief HTML: sequence and prediction only
[TXT]jp_pCkdbb0.svg.html2015-04-17 18:36 21KJalview SVG summary of results
[ ]jp_pCkdbb0.tar.gz2015-04-17 18:36 62KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.