JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:45 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2a90a1.name2015-04-17 19:16 0 Job name flag file
[ ]jp_tZ6IxPV.align2015-04-17 21:45 27KPSIBLAST alignment in FASTA format
[TXT]jp_tZ6IxPV.als2015-04-17 21:45 2.1KAlscript command file for PS/PDF output
[ ]jp_tZ6IxPV.blast.gz2015-04-17 21:45 134KCompressed PSIBLAST output file
[TXT]jp_tZ6IxPV.coils.csv2015-04-17 21:45 510 COILS output in CSV format
[ ]jp_tZ6IxPV.coilseq.lupas_142015-04-17 21:45 3.4KCOILS output, window length 14
[ ]jp_tZ6IxPV.coilseq.lupas_212015-04-17 21:45 3.4KCOILS output, window length 21
[ ]jp_tZ6IxPV.coilseq.lupas_282015-04-17 21:45 3.4KCOILS output, window length 28
[ ]jp_tZ6IxPV.concise2015-04-17 21:45 54KPrediction: coiled-coil, solvent, alignment
[ ]jp_tZ6IxPV.concise.blc2015-04-17 21:45 28KBLC format prediction and alignment data
[ ]jp_tZ6IxPV.concise.fasta2015-04-17 21:45 28KPrediction: coiled-coil, solvent, alignment
[ ]jp_tZ6IxPV.concise.pdf2015-04-17 21:45 148KPDF prediction and alignment data
[ ]jp_tZ6IxPV.concise.ps2015-04-17 21:45 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_tZ6IxPV.fasta2015-04-17 21:43 94 Input query sequence in FASTA format
[ ]jp_tZ6IxPV.full_MSA.fasta2015-04-17 21:45 395KFull MSA before JPred filters in FASTA
[TXT]jp_tZ6IxPV.full_MSA.fasta.noGaps.html2015-04-17 21:45 174KFull MSA before JPred filters in FASTA
[TXT]jp_tZ6IxPV.full_MSA.fasta.withGaps.html2015-04-17 21:45 1.5MFull MSA before JPred filters in FASTA
[ ]jp_tZ6IxPV.hmm2015-04-17 21:45 15KHHMer2 profile of the alignment
[TXT]jp_tZ6IxPV.html2015-04-17 21:45 88KHTML prediction and alignment data
[ ]jp_tZ6IxPV.input2015-04-17 19:16 87 Raw input data for analysis
[ ]jp_tZ6IxPV.jalview2015-04-17 21:45 2.4KJalview annotation file for alignment
[ ]jp_tZ6IxPV.jnet2015-04-17 21:45 3.0KJnet secondary structure output
[TXT]jp_tZ6IxPV.profile2015-04-17 21:44 13KPSIBLAST profile from alignment
[ ]jp_tZ6IxPV.pssm2015-04-17 21:45 17KPSIBLAST PSSM for Jnet
[TXT]jp_tZ6IxPV.results.html2016-02-15 12:19 42KJPred results page
[TXT]jp_tZ6IxPV.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_tZ6IxPV.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_tZ6IxPV.seq2015-04-17 19:16 94 Sequence data file
[TXT]jp_tZ6IxPV.simple.html2015-04-17 21:45 1.2KBrief HTML: sequence and prediction only
[TXT]jp_tZ6IxPV.svg.html2015-04-17 21:45 34KJalview SVG summary of results
[ ]jp_tZ6IxPV.tar.gz2015-04-17 21:45 425KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.