JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:32 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2b4jc1.name2015-04-17 17:23 0 Job name flag file
[ ]jp_NE3zBmi.align2015-04-17 18:32 7.5KPSIBLAST alignment in FASTA format
[TXT]jp_NE3zBmi.als2015-04-17 18:32 1.9KAlscript command file for PS/PDF output
[ ]jp_NE3zBmi.blast.gz2015-04-17 18:32 43KCompressed PSIBLAST output file
[TXT]jp_NE3zBmi.coils.csv2015-04-17 18:32 516 COILS output in CSV format
[ ]jp_NE3zBmi.coilseq.lupas_142015-04-17 18:32 3.4KCOILS output, window length 14
[ ]jp_NE3zBmi.coilseq.lupas_212015-04-17 18:32 3.4KCOILS output, window length 21
[ ]jp_NE3zBmi.coilseq.lupas_282015-04-17 18:32 3.4KCOILS output, window length 28
[ ]jp_NE3zBmi.concise2015-04-17 18:32 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_NE3zBmi.concise.blc2015-04-17 18:32 8.6KBLC format prediction and alignment data
[ ]jp_NE3zBmi.concise.fasta2015-04-17 18:32 8.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_NE3zBmi.concise.pdf2015-04-17 18:32 59KPDF prediction and alignment data
[ ]jp_NE3zBmi.concise.ps2015-04-17 18:32 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_NE3zBmi.fasta2015-04-17 18:30 95 Input query sequence in FASTA format
[ ]jp_NE3zBmi.full_MSA.fasta2015-04-17 18:32 59KFull MSA before JPred filters in FASTA
[TXT]jp_NE3zBmi.full_MSA.fasta.noGaps.html2015-04-17 18:32 56KFull MSA before JPred filters in FASTA
[TXT]jp_NE3zBmi.full_MSA.fasta.withGaps.html2015-04-17 18:32 178KFull MSA before JPred filters in FASTA
[ ]jp_NE3zBmi.hmm2015-04-17 18:32 15KHHMer2 profile of the alignment
[TXT]jp_NE3zBmi.html2015-04-17 18:32 32KHTML prediction and alignment data
[ ]jp_NE3zBmi.input2015-04-17 17:23 88 Raw input data for analysis
[ ]jp_NE3zBmi.jalview2015-04-17 18:32 2.5KJalview annotation file for alignment
[ ]jp_NE3zBmi.jnet2015-04-17 18:32 3.0KJnet secondary structure output
[TXT]jp_NE3zBmi.profile2015-04-17 18:31 13KPSIBLAST profile from alignment
[ ]jp_NE3zBmi.pssm2015-04-17 18:32 17KPSIBLAST PSSM for Jnet
[TXT]jp_NE3zBmi.results.html2016-02-15 12:19 43KJPred results page
[TXT]jp_NE3zBmi.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_NE3zBmi.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_NE3zBmi.seq2015-04-17 17:23 95 Sequence data file
[TXT]jp_NE3zBmi.simple.html2015-04-17 18:32 1.1KBrief HTML: sequence and prediction only
[TXT]jp_NE3zBmi.svg.html2015-04-17 18:32 35KJalview SVG summary of results
[ ]jp_NE3zBmi.tar.gz2015-04-17 18:32 161KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.