JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:46 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2f69a1.name2015-04-17 17:28 0 Job name flag file
[ ]jp_b_G0z5A.align2015-04-17 18:46 2.1KPSIBLAST alignment in FASTA format
[TXT]jp_b_G0z5A.als2015-04-17 18:46 2.2KAlscript command file for PS/PDF output
[ ]jp_b_G0z5A.blast.gz2015-04-17 18:46 6.3KCompressed PSIBLAST output file
[TXT]jp_b_G0z5A.coils.csv2015-04-17 18:46 498 COILS output in CSV format
[ ]jp_b_G0z5A.coilseq.lupas_142015-04-17 18:46 3.3KCOILS output, window length 14
[ ]jp_b_G0z5A.coilseq.lupas_212015-04-17 18:46 3.3KCOILS output, window length 21
[ ]jp_b_G0z5A.coilseq.lupas_282015-04-17 18:46 3.3KCOILS output, window length 28
[ ]jp_b_G0z5A.concise2015-04-17 18:46 7.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_b_G0z5A.concise.blc2015-04-17 18:46 3.3KBLC format prediction and alignment data
[ ]jp_b_G0z5A.concise.fasta2015-04-17 18:46 3.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_b_G0z5A.concise.pdf2015-04-17 18:46 20KPDF prediction and alignment data
[ ]jp_b_G0z5A.concise.ps2015-04-17 18:46 352KPrediction: coiled-coil, solvent, alignment
[ ]jp_b_G0z5A.fasta2015-04-17 18:41 92 Input query sequence in FASTA format
[ ]jp_b_G0z5A.full_MSA.fasta2015-04-17 18:46 6.5KFull MSA before JPred filters in FASTA
[TXT]jp_b_G0z5A.full_MSA.fasta.noGaps.html2015-04-17 18:46 13KFull MSA before JPred filters in FASTA
[TXT]jp_b_G0z5A.full_MSA.fasta.withGaps.html2015-04-17 18:46 21KFull MSA before JPred filters in FASTA
[ ]jp_b_G0z5A.hmm2015-04-17 18:46 15KHHMer2 profile of the alignment
[TXT]jp_b_G0z5A.html2015-04-17 18:46 15KHTML prediction and alignment data
[ ]jp_b_G0z5A.input2015-04-17 17:28 85 Raw input data for analysis
[ ]jp_b_G0z5A.jalview2015-04-17 18:46 2.4KJalview annotation file for alignment
[ ]jp_b_G0z5A.jnet2015-04-17 18:46 2.9KJnet secondary structure output
[TXT]jp_b_G0z5A.profile2015-04-17 18:43 13KPSIBLAST profile from alignment
[ ]jp_b_G0z5A.pssm2015-04-17 18:46 17KPSIBLAST PSSM for Jnet
[TXT]jp_b_G0z5A.results.html2016-02-15 12:19 42KJPred results page
[TXT]jp_b_G0z5A.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_b_G0z5A.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_b_G0z5A.seq2015-04-17 17:28 92 Sequence data file
[TXT]jp_b_G0z5A.simple.html2015-04-17 18:46 1.2KBrief HTML: sequence and prediction only
[TXT]jp_b_G0z5A.svg.html2015-04-17 18:46 34KJalview SVG summary of results
[ ]jp_b_G0z5A.tar.gz2015-04-17 18:46 56KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.