JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:05 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fdoa1.name2015-04-17 17:41 0 Job name flag file
[ ]jp_dZXUHmO.align2015-04-17 19:05 323 PSIBLAST alignment in FASTA format
[TXT]jp_dZXUHmO.als2015-04-17 19:05 2.1KAlscript command file for PS/PDF output
[ ]jp_dZXUHmO.blast.gz2015-04-17 19:05 1.8KCompressed PSIBLAST output file
[TXT]jp_dZXUHmO.coils.csv2015-04-17 19:05 582 COILS output in CSV format
[ ]jp_dZXUHmO.coilseq.lupas_142015-04-17 19:05 3.9KCOILS output, window length 14
[ ]jp_dZXUHmO.coilseq.lupas_212015-04-17 19:05 3.9KCOILS output, window length 21
[ ]jp_dZXUHmO.coilseq.lupas_282015-04-17 19:05 3.9KCOILS output, window length 28
[ ]jp_dZXUHmO.concise2015-04-17 19:05 4.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_dZXUHmO.concise.blc2015-04-17 19:05 1.8KBLC format prediction and alignment data
[ ]jp_dZXUHmO.concise.fasta2015-04-17 19:05 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_dZXUHmO.concise.pdf2015-04-17 19:05 13KPDF prediction and alignment data
[ ]jp_dZXUHmO.concise.ps2015-04-17 19:05 199KPrediction: coiled-coil, solvent, alignment
[ ]jp_dZXUHmO.fasta2015-04-17 19:03 106 Input query sequence in FASTA format
[ ]jp_dZXUHmO.full_MSA.fasta2015-04-17 19:05 442 Full MSA before JPred filters in FASTA
[TXT]jp_dZXUHmO.full_MSA.fasta.noGaps.html2015-04-17 19:05 958 Full MSA before JPred filters in FASTA
[TXT]jp_dZXUHmO.full_MSA.fasta.withGaps.html2015-04-17 19:05 1.1KFull MSA before JPred filters in FASTA
[ ]jp_dZXUHmO.hmm2015-04-17 19:05 17KHHMer2 profile of the alignment
[TXT]jp_dZXUHmO.html2015-04-17 19:05 10KHTML prediction and alignment data
[ ]jp_dZXUHmO.input2015-04-17 17:41 99 Raw input data for analysis
[ ]jp_dZXUHmO.jalview2015-04-17 19:05 2.7KJalview annotation file for alignment
[ ]jp_dZXUHmO.jnet2015-04-17 19:05 3.4KJnet secondary structure output
[TXT]jp_dZXUHmO.profile2015-04-17 19:04 15KPSIBLAST profile from alignment
[ ]jp_dZXUHmO.pssm2015-04-17 19:05 20KPSIBLAST PSSM for Jnet
[TXT]jp_dZXUHmO.results.html2016-02-15 12:19 48KJPred results page
[TXT]jp_dZXUHmO.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_dZXUHmO.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_dZXUHmO.seq2015-04-17 17:41 106 Sequence data file
[TXT]jp_dZXUHmO.simple.html2015-04-17 19:05 1.2KBrief HTML: sequence and prediction only
[TXT]jp_dZXUHmO.svg.html2015-04-17 19:05 40KJalview SVG summary of results
[ ]jp_dZXUHmO.tar.gz2015-04-17 19:05 38KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.