JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:51 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fhzb_.name2015-04-17 18:06 0 Job name flag file
[ ]jp_Raj5Pz0.align2015-04-17 19:51 2.1KPSIBLAST alignment in FASTA format
[TXT]jp_Raj5Pz0.als2015-04-17 19:51 2.1KAlscript command file for PS/PDF output
[ ]jp_Raj5Pz0.blast.gz2015-04-17 19:51 5.1KCompressed PSIBLAST output file
[TXT]jp_Raj5Pz0.coils.csv2015-04-17 19:51 588 COILS output in CSV format
[ ]jp_Raj5Pz0.coilseq.lupas_142015-04-17 19:51 3.9KCOILS output, window length 14
[ ]jp_Raj5Pz0.coilseq.lupas_212015-04-17 19:51 3.9KCOILS output, window length 21
[ ]jp_Raj5Pz0.coilseq.lupas_282015-04-17 19:51 3.9KCOILS output, window length 28
[ ]jp_Raj5Pz0.concise2015-04-17 19:51 8.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_Raj5Pz0.concise.blc2015-04-17 19:51 3.5KBLC format prediction and alignment data
[ ]jp_Raj5Pz0.concise.fasta2015-04-17 19:51 3.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_Raj5Pz0.concise.pdf2015-04-17 19:51 21KPDF prediction and alignment data
[ ]jp_Raj5Pz0.concise.ps2015-04-17 19:51 376KPrediction: coiled-coil, solvent, alignment
[ ]jp_Raj5Pz0.fasta2015-04-17 19:46 107 Input query sequence in FASTA format
[ ]jp_Raj5Pz0.full_MSA.fasta2015-04-17 19:51 3.5KFull MSA before JPred filters in FASTA
[TXT]jp_Raj5Pz0.full_MSA.fasta.noGaps.html2015-04-17 19:51 6.8KFull MSA before JPred filters in FASTA
[TXT]jp_Raj5Pz0.full_MSA.fasta.withGaps.html2015-04-17 19:51 11KFull MSA before JPred filters in FASTA
[ ]jp_Raj5Pz0.hmm2015-04-17 19:51 17KHHMer2 profile of the alignment
[TXT]jp_Raj5Pz0.html2015-04-17 19:51 14KHTML prediction and alignment data
[ ]jp_Raj5Pz0.input2015-04-17 18:06 100 Raw input data for analysis
[ ]jp_Raj5Pz0.jalview2015-04-17 19:51 2.6KJalview annotation file for alignment
[ ]jp_Raj5Pz0.jnet2015-04-17 19:51 3.5KJnet secondary structure output
[TXT]jp_Raj5Pz0.profile2015-04-17 19:49 15KPSIBLAST profile from alignment
[ ]jp_Raj5Pz0.pssm2015-04-17 19:51 20KPSIBLAST PSSM for Jnet
[TXT]jp_Raj5Pz0.results.html2016-02-15 12:19 47KJPred results page
[TXT]jp_Raj5Pz0.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_Raj5Pz0.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_Raj5Pz0.seq2015-04-17 18:06 107 Sequence data file
[TXT]jp_Raj5Pz0.simple.html2015-04-17 19:51 1.2KBrief HTML: sequence and prediction only
[TXT]jp_Raj5Pz0.svg.html2015-04-17 19:51 39KJalview SVG summary of results
[ ]jp_Raj5Pz0.tar.gz2015-04-17 19:51 56KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.