JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:51 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2fyuk_.name2015-04-17 16:18 0 Job name flag file
[ ]jp_roJaNF5.align2015-04-17 16:50 3.5KPSIBLAST alignment in FASTA format
[TXT]jp_roJaNF5.als2015-04-17 16:50 1.7KAlscript command file for PS/PDF output
[ ]jp_roJaNF5.blast.gz2015-04-17 16:50 7.0KCompressed PSIBLAST output file
[TXT]jp_roJaNF5.coils.csv2015-04-17 16:50 348 COILS output in CSV format
[ ]jp_roJaNF5.coilseq.lupas_142015-04-17 16:50 2.2KCOILS output, window length 14
[ ]jp_roJaNF5.coilseq.lupas_212015-04-17 16:50 2.2KCOILS output, window length 21
[ ]jp_roJaNF5.coilseq.lupas_282015-04-17 16:50 2.2KCOILS output, window length 28
[ ]jp_roJaNF5.concise2015-04-17 16:50 8.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_roJaNF5.concise.blc2015-04-17 16:50 4.4KBLC format prediction and alignment data
[ ]jp_roJaNF5.concise.fasta2015-04-17 16:50 4.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_roJaNF5.concise.pdf2015-04-17 16:50 27KPDF prediction and alignment data
[ ]jp_roJaNF5.concise.ps2015-04-17 16:50 456KPrediction: coiled-coil, solvent, alignment
[ ]jp_roJaNF5.fasta2015-04-17 16:46 66 Input query sequence in FASTA format
[ ]jp_roJaNF5.full_MSA.fasta2015-04-17 16:50 6.9KFull MSA before JPred filters in FASTA
[TXT]jp_roJaNF5.full_MSA.fasta.noGaps.html2015-04-17 16:50 18KFull MSA before JPred filters in FASTA
[TXT]jp_roJaNF5.full_MSA.fasta.withGaps.html2015-04-17 16:50 20KFull MSA before JPred filters in FASTA
[ ]jp_roJaNF5.hmm2015-04-17 16:50 9.9KHHMer2 profile of the alignment
[TXT]jp_roJaNF5.html2015-04-17 16:50 20KHTML prediction and alignment data
[ ]jp_roJaNF5.input2015-04-17 16:18 60 Raw input data for analysis
[ ]jp_roJaNF5.jalview2015-04-17 16:50 1.9KJalview annotation file for alignment
[ ]jp_roJaNF5.jnet2015-04-17 16:50 2.0KJnet secondary structure output
[TXT]jp_roJaNF5.profile2015-04-17 16:49 8.9KPSIBLAST profile from alignment
[ ]jp_roJaNF5.pssm2015-04-17 16:50 11KPSIBLAST PSSM for Jnet
[TXT]jp_roJaNF5.results.html2016-02-15 12:19 33KJPred results page
[TXT]jp_roJaNF5.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_roJaNF5.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_roJaNF5.seq2015-04-17 16:18 66 Sequence data file
[TXT]jp_roJaNF5.simple.html2015-04-17 16:50 1.0KBrief HTML: sequence and prediction only
[TXT]jp_roJaNF5.svg.html2015-04-17 16:51 25KJalview SVG summary of results
[ ]jp_roJaNF5.tar.gz2015-04-17 16:51 61KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.