JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:50 4.7KJPred server log file
[TXT]README2016-02-15 12:19 2.1KResults file descriptions
[TXT]d2gtia2.name2015-04-17 17:30 0 Job name flag file
[ ]jp_uLizs2_.align2015-04-17 18:50 6.1KPSIBLAST alignment in FASTA format
[TXT]jp_uLizs2_.als2015-04-17 18:50 3.0KAlscript command file for PS/PDF output
[ ]jp_uLizs2_.blast.gz2015-04-17 18:50 25KCompressed PSIBLAST output file
[TXT]jp_uLizs2_.coils.csv2015-04-17 18:50 948 COILS output in CSV format
[ ]jp_uLizs2_.coilseq.lupas_142015-04-17 18:50 6.4KCOILS output, window length 14
[ ]jp_uLizs2_.coilseq.lupas_212015-04-17 18:50 6.4KCOILS output, window length 21
[ ]jp_uLizs2_.coilseq.lupas_282015-04-17 18:50 6.4KCOILS output, window length 28
[ ]jp_uLizs2_.concise2015-04-17 18:50 18KPrediction: coiled-coil, solvent, alignment
[ ]jp_uLizs2_.concise.blc2015-04-17 18:50 8.3KBLC format prediction and alignment data
[ ]jp_uLizs2_.concise.fasta2015-04-17 18:50 7.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_uLizs2_.concise.pdf2015-04-17 18:50 96KPDF prediction and alignment data
[ ]jp_uLizs2_.concise.ps2015-04-17 18:50 1.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_uLizs2_.fasta2015-04-17 18:44 168 Input query sequence in FASTA format
[ ]jp_uLizs2_.full_MSA.fasta2015-04-17 18:50 23KFull MSA before JPred filters in FASTA
[TXT]jp_uLizs2_.full_MSA.fasta.noGaps.html2015-04-17 18:50 32KFull MSA before JPred filters in FASTA
[TXT]jp_uLizs2_.full_MSA.fasta.withGaps.html2015-04-17 18:50 79KFull MSA before JPred filters in FASTA
[ ]jp_uLizs2_.hmm2015-04-17 18:50 29KHHMer2 profile of the alignment
[TXT]jp_uLizs2_.html2015-04-17 18:50 28KHTML prediction and alignment data
[ ]jp_uLizs2_.input2015-04-17 17:30 160 Raw input data for analysis
[ ]jp_uLizs2_.jalview2015-04-17 18:50 3.9KJalview annotation file for alignment
[ ]jp_uLizs2_.jnet2015-04-17 18:50 5.6KJnet secondary structure output
[TXT]jp_uLizs2_.profile2015-04-17 18:48 25KPSIBLAST profile from alignment
[ ]jp_uLizs2_.pssm2015-04-17 18:50 33KPSIBLAST PSSM for Jnet
[TXT]jp_uLizs2_.results.html2016-02-15 12:19 72KJPred results page
[TXT]jp_uLizs2_.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_uLizs2_.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_uLizs2_.seq2015-04-17 17:30 168 Sequence data file
[TXT]jp_uLizs2_.simple.html2015-04-17 18:50 1.5KBrief HTML: sequence and prediction only
[TXT]jp_uLizs2_.svg.html2015-04-17 18:50 64KJalview SVG summary of results
[ ]jp_uLizs2_.tar.gz2015-04-17 18:50 170KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.