JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:54 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2icwg_.name2015-04-17 16:55 0 Job name flag file
[ ]jp_byPUizW.align2015-04-17 17:54 456 PSIBLAST alignment in FASTA format
[TXT]jp_byPUizW.als2015-04-17 17:54 3.3KAlscript command file for PS/PDF output
[ ]jp_byPUizW.blast.gz2015-04-17 17:54 2.0KCompressed PSIBLAST output file
[TXT]jp_byPUizW.coils.csv2015-04-17 17:54 1.3KCOILS output in CSV format
[ ]jp_byPUizW.coilseq.lupas_142015-04-17 17:54 8.9KCOILS output, window length 14
[ ]jp_byPUizW.coilseq.lupas_212015-04-17 17:54 8.9KCOILS output, window length 21
[ ]jp_byPUizW.coilseq.lupas_282015-04-17 17:54 8.9KCOILS output, window length 28
[ ]jp_byPUizW.concise2015-04-17 17:54 10KPrediction: coiled-coil, solvent, alignment
[ ]jp_byPUizW.concise.blc2015-04-17 17:54 3.7KBLC format prediction and alignment data
[ ]jp_byPUizW.concise.fasta2015-04-17 17:54 2.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_byPUizW.concise.pdf2015-04-17 17:54 26KPDF prediction and alignment data
[ ]jp_byPUizW.concise.ps2015-04-17 17:54 444KPrediction: coiled-coil, solvent, alignment
[ ]jp_byPUizW.fasta2015-04-17 17:52 228 Input query sequence in FASTA format
[ ]jp_byPUizW.full_MSA.fasta2015-04-17 17:54 926 Full MSA before JPred filters in FASTA
[TXT]jp_byPUizW.full_MSA.fasta.noGaps.html2015-04-17 17:54 1.3KFull MSA before JPred filters in FASTA
[TXT]jp_byPUizW.full_MSA.fasta.withGaps.html2015-04-17 17:54 1.4KFull MSA before JPred filters in FASTA
[ ]jp_byPUizW.hmm2015-04-17 17:54 40KHHMer2 profile of the alignment
[TXT]jp_byPUizW.html2015-04-17 17:54 22KHTML prediction and alignment data
[ ]jp_byPUizW.input2015-04-17 16:55 220 Raw input data for analysis
[ ]jp_byPUizW.jalview2015-04-17 17:54 5.2KJalview annotation file for alignment
[ ]jp_byPUizW.jnet2015-04-17 17:54 7.8KJnet secondary structure output
[TXT]jp_byPUizW.profile2015-04-17 17:53 34KPSIBLAST profile from alignment
[ ]jp_byPUizW.pssm2015-04-17 17:54 46KPSIBLAST PSSM for Jnet
[TXT]jp_byPUizW.results.html2016-02-15 12:20 96KJPred results page
[TXT]jp_byPUizW.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_byPUizW.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_byPUizW.seq2015-04-17 16:55 228 Sequence data file
[TXT]jp_byPUizW.simple.html2015-04-17 17:54 1.6KBrief HTML: sequence and prediction only
[TXT]jp_byPUizW.svg.html2015-04-17 17:54 88KJalview SVG summary of results
[ ]jp_byPUizW.tar.gz2015-04-17 17:54 63KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.