JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:56 4.9KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2jdqd_.name2015-04-17 16:55 0 Job name flag file
[ ]jp_TzBzz2T.align2015-04-17 17:55 476 PSIBLAST alignment in FASTA format
[TXT]jp_TzBzz2T.als2015-04-17 17:55 2.1KAlscript command file for PS/PDF output
[ ]jp_TzBzz2T.blast.gz2015-04-17 17:55 5.0KCompressed PSIBLAST output file
[TXT]jp_TzBzz2T.coils.csv2015-04-17 17:55 408 COILS output in CSV format
[ ]jp_TzBzz2T.coilseq.lupas_142015-04-17 17:55 2.6KCOILS output, window length 14
[ ]jp_TzBzz2T.coilseq.lupas_212015-04-17 17:55 2.6KCOILS output, window length 21
[ ]jp_TzBzz2T.coilseq.lupas_282015-04-17 17:55 2.6KCOILS output, window length 28
[ ]jp_TzBzz2T.concise2015-04-17 17:55 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_TzBzz2T.concise.blc2015-04-17 17:55 1.5KBLC format prediction and alignment data
[ ]jp_TzBzz2T.concise.fasta2015-04-17 17:55 1.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_TzBzz2T.concise.pdf2015-04-17 17:55 2.2KPDF prediction and alignment data
[ ]jp_TzBzz2T.concise.ps2015-04-17 17:55 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_TzBzz2T.fasta2015-04-17 17:52 76 Input query sequence in FASTA format
[ ]jp_TzBzz2T.full_MSA.fasta2015-04-17 17:55 7.7KFull MSA before JPred filters in FASTA
[TXT]jp_TzBzz2T.full_MSA.fasta.noGaps.html2015-04-17 17:55 16KFull MSA before JPred filters in FASTA
[TXT]jp_TzBzz2T.full_MSA.fasta.withGaps.html2015-04-17 17:55 21KFull MSA before JPred filters in FASTA
[ ]jp_TzBzz2T.hmm2015-04-17 17:55 12KHHMer2 profile of the alignment
[TXT]jp_TzBzz2T.html2015-04-17 17:55 8.2KHTML prediction and alignment data
[ ]jp_TzBzz2T.input2015-04-17 16:55 70 Raw input data for analysis
[ ]jp_TzBzz2T.jalview2015-04-17 17:55 2.1KJalview annotation file for alignment
[ ]jp_TzBzz2T.jnet2015-04-17 17:55 2.4KJnet secondary structure output
[TXT]jp_TzBzz2T.profile2015-04-17 17:54 10KPSIBLAST profile from alignment
[ ]jp_TzBzz2T.pssm2015-04-17 17:55 14KPSIBLAST PSSM for Jnet
[TXT]jp_TzBzz2T.results.html2016-02-15 12:20 37KJPred results page
[TXT]jp_TzBzz2T.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_TzBzz2T.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_TzBzz2T.seq2015-04-17 16:55 76 Sequence data file
[TXT]jp_TzBzz2T.simple.html2015-04-17 17:55 1.2KBrief HTML: sequence and prediction only
[TXT]jp_TzBzz2T.svg.html2015-04-17 17:56 29KJalview SVG summary of results
[ ]jp_TzBzz2T.tar.gz2015-04-17 17:56 30KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.