JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:50 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2oa5a_.name2015-04-17 17:32 0 Job name flag file
[ ]jp_ZYi_9s_.align2015-04-17 18:50 1.6KPSIBLAST alignment in FASTA format
[TXT]jp_ZYi_9s_.als2015-04-17 18:50 2.0KAlscript command file for PS/PDF output
[ ]jp_ZYi_9s_.blast.gz2015-04-17 18:50 3.1KCompressed PSIBLAST output file
[TXT]jp_ZYi_9s_.coils.csv2015-04-17 18:50 582 COILS output in CSV format
[ ]jp_ZYi_9s_.coilseq.lupas_142015-04-17 18:50 3.9KCOILS output, window length 14
[ ]jp_ZYi_9s_.coilseq.lupas_212015-04-17 18:50 3.9KCOILS output, window length 21
[ ]jp_ZYi_9s_.coilseq.lupas_282015-04-17 18:50 3.9KCOILS output, window length 28
[ ]jp_ZYi_9s_.concise2015-04-17 18:50 7.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZYi_9s_.concise.blc2015-04-17 18:50 3.0KBLC format prediction and alignment data
[ ]jp_ZYi_9s_.concise.fasta2015-04-17 18:50 2.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZYi_9s_.concise.pdf2015-04-17 18:50 21KPDF prediction and alignment data
[ ]jp_ZYi_9s_.concise.ps2015-04-17 18:50 351KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZYi_9s_.fasta2015-04-17 18:48 106 Input query sequence in FASTA format
[ ]jp_ZYi_9s_.full_MSA.fasta2015-04-17 18:50 1.9KFull MSA before JPred filters in FASTA
[TXT]jp_ZYi_9s_.full_MSA.fasta.noGaps.html2015-04-17 18:50 3.8KFull MSA before JPred filters in FASTA
[TXT]jp_ZYi_9s_.full_MSA.fasta.withGaps.html2015-04-17 18:50 4.3KFull MSA before JPred filters in FASTA
[ ]jp_ZYi_9s_.hmm2015-04-17 18:50 17KHHMer2 profile of the alignment
[TXT]jp_ZYi_9s_.html2015-04-17 18:50 17KHTML prediction and alignment data
[ ]jp_ZYi_9s_.input2015-04-17 17:32 99 Raw input data for analysis
[ ]jp_ZYi_9s_.jalview2015-04-17 18:50 2.7KJalview annotation file for alignment
[ ]jp_ZYi_9s_.jnet2015-04-17 18:50 3.4KJnet secondary structure output
[TXT]jp_ZYi_9s_.profile2015-04-17 18:49 15KPSIBLAST profile from alignment
[ ]jp_ZYi_9s_.pssm2015-04-17 18:50 20KPSIBLAST PSSM for Jnet
[TXT]jp_ZYi_9s_.results.html2016-02-15 12:20 48KJPred results page
[TXT]jp_ZYi_9s_.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ZYi_9s_.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ZYi_9s_.seq2015-04-17 17:32 106 Sequence data file
[TXT]jp_ZYi_9s_.simple.html2015-04-17 18:50 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ZYi_9s_.svg.html2015-04-17 18:50 40KJalview SVG summary of results
[ ]jp_ZYi_9s_.tar.gz2015-04-17 18:50 50KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.