JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:57 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2odka1.name2015-04-17 15:42 0 Job name flag file
[ ]jp_OiWtbu2.align2015-04-17 15:57 58KPSIBLAST alignment in FASTA format
[TXT]jp_OiWtbu2.als2015-04-17 15:57 1.8KAlscript command file for PS/PDF output
[ ]jp_OiWtbu2.blast.gz2015-04-17 15:56 93KCompressed PSIBLAST output file
[TXT]jp_OiWtbu2.coils.csv2015-04-17 15:57 336 COILS output in CSV format
[ ]jp_OiWtbu2.coilseq.lupas_142015-04-17 15:57 2.1KCOILS output, window length 14
[ ]jp_OiWtbu2.coilseq.lupas_212015-04-17 15:57 2.1KCOILS output, window length 21
[ ]jp_OiWtbu2.coilseq.lupas_282015-04-17 15:57 2.1KCOILS output, window length 28
[ ]jp_OiWtbu2.concise2015-04-17 15:57 108KPrediction: coiled-coil, solvent, alignment
[ ]jp_OiWtbu2.concise.blc2015-04-17 15:57 58KBLC format prediction and alignment data
[ ]jp_OiWtbu2.concise.fasta2015-04-17 15:57 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_OiWtbu2.concise.pdf2015-04-17 15:57 314KPDF prediction and alignment data
[ ]jp_OiWtbu2.concise.ps2015-04-17 15:57 5.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_OiWtbu2.fasta2015-04-17 15:54 64 Input query sequence in FASTA format
[ ]jp_OiWtbu2.full_MSA.fasta2015-04-17 15:56 187KFull MSA before JPred filters in FASTA
[TXT]jp_OiWtbu2.full_MSA.fasta.noGaps.html2015-04-17 15:57 248KFull MSA before JPred filters in FASTA
[TXT]jp_OiWtbu2.full_MSA.fasta.withGaps.html2015-04-17 15:57 1.2MFull MSA before JPred filters in FASTA
[ ]jp_OiWtbu2.hmm2015-04-17 15:57 9.6KHHMer2 profile of the alignment
[TXT]jp_OiWtbu2.html2015-04-17 15:57 225KHTML prediction and alignment data
[ ]jp_OiWtbu2.input2015-04-17 15:42 58 Raw input data for analysis
[ ]jp_OiWtbu2.jalview2015-04-17 15:57 1.9KJalview annotation file for alignment
[ ]jp_OiWtbu2.jnet2015-04-17 15:57 2.0KJnet secondary structure output
[TXT]jp_OiWtbu2.profile2015-04-17 15:56 8.6KPSIBLAST profile from alignment
[ ]jp_OiWtbu2.pssm2015-04-17 15:57 11KPSIBLAST PSSM for Jnet
[TXT]jp_OiWtbu2.results.html2016-02-15 12:20 32KJPred results page
[TXT]jp_OiWtbu2.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_OiWtbu2.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_OiWtbu2.seq2015-04-17 15:42 64 Sequence data file
[TXT]jp_OiWtbu2.simple.html2015-04-17 15:57 1.0KBrief HTML: sequence and prediction only
[TXT]jp_OiWtbu2.svg.html2015-04-17 15:57 24KJalview SVG summary of results
[ ]jp_OiWtbu2.tar.gz2015-04-17 15:57 626KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.