JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:58 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d2pk8a_.name2015-04-17 18:10 0 Job name flag file
[ ]jp_ii9gGIj.align2015-04-17 19:57 2.5KPSIBLAST alignment in FASTA format
[TXT]jp_ii9gGIj.als2015-04-17 19:57 2.2KAlscript command file for PS/PDF output
[ ]jp_ii9gGIj.blast.gz2015-04-17 19:57 4.6KCompressed PSIBLAST output file
[TXT]jp_ii9gGIj.coils.csv2015-04-17 19:57 594 COILS output in CSV format
[ ]jp_ii9gGIj.coilseq.lupas_142015-04-17 19:57 3.9KCOILS output, window length 14
[ ]jp_ii9gGIj.coilseq.lupas_212015-04-17 19:57 3.9KCOILS output, window length 21
[ ]jp_ii9gGIj.coilseq.lupas_282015-04-17 19:57 3.9KCOILS output, window length 28
[ ]jp_ii9gGIj.concise2015-04-17 19:57 8.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_ii9gGIj.concise.blc2015-04-17 19:57 4.0KBLC format prediction and alignment data
[ ]jp_ii9gGIj.concise.fasta2015-04-17 19:57 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_ii9gGIj.concise.pdf2015-04-17 19:57 27KPDF prediction and alignment data
[ ]jp_ii9gGIj.concise.ps2015-04-17 19:57 456KPrediction: coiled-coil, solvent, alignment
[ ]jp_ii9gGIj.fasta2015-04-17 19:51 108 Input query sequence in FASTA format
[ ]jp_ii9gGIj.full_MSA.fasta2015-04-17 19:57 3.4KFull MSA before JPred filters in FASTA
[TXT]jp_ii9gGIj.full_MSA.fasta.noGaps.html2015-04-17 19:57 7.0KFull MSA before JPred filters in FASTA
[TXT]jp_ii9gGIj.full_MSA.fasta.withGaps.html2015-04-17 19:57 7.0KFull MSA before JPred filters in FASTA
[ ]jp_ii9gGIj.hmm2015-04-17 19:57 18KHHMer2 profile of the alignment
[TXT]jp_ii9gGIj.html2015-04-17 19:57 18KHTML prediction and alignment data
[ ]jp_ii9gGIj.input2015-04-17 18:10 101 Raw input data for analysis
[ ]jp_ii9gGIj.jalview2015-04-17 19:57 2.7KJalview annotation file for alignment
[ ]jp_ii9gGIj.jnet2015-04-17 19:57 3.5KJnet secondary structure output
[TXT]jp_ii9gGIj.profile2015-04-17 19:55 15KPSIBLAST profile from alignment
[ ]jp_ii9gGIj.pssm2015-04-17 19:57 20KPSIBLAST PSSM for Jnet
[TXT]jp_ii9gGIj.results.html2016-02-15 12:20 49KJPred results page
[TXT]jp_ii9gGIj.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ii9gGIj.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ii9gGIj.seq2015-04-17 18:10 108 Sequence data file
[TXT]jp_ii9gGIj.simple.html2015-04-17 19:57 1.2KBrief HTML: sequence and prediction only
[TXT]jp_ii9gGIj.svg.html2015-04-17 19:58 41KJalview SVG summary of results
[ ]jp_ii9gGIj.tar.gz2015-04-17 19:58 61KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.