JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:05 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3ag3l_.name2015-04-17 17:38 0 Job name flag file
[ ]jp_o5Mden4.align2015-04-17 19:05 2.5KPSIBLAST alignment in FASTA format
[TXT]jp_o5Mden4.als2015-04-17 19:05 1.7KAlscript command file for PS/PDF output
[ ]jp_o5Mden4.blast.gz2015-04-17 19:05 7.3KCompressed PSIBLAST output file
[TXT]jp_o5Mden4.coils.csv2015-04-17 19:05 306 COILS output in CSV format
[ ]jp_o5Mden4.coilseq.lupas_142015-04-17 19:05 1.9KCOILS output, window length 14
[ ]jp_o5Mden4.coilseq.lupas_212015-04-17 19:05 1.9KCOILS output, window length 21
[ ]jp_o5Mden4.coilseq.lupas_282015-04-17 19:05 1.9KCOILS output, window length 28
[ ]jp_o5Mden4.concise2015-04-17 19:05 6.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_o5Mden4.concise.blc2015-04-17 19:05 3.2KBLC format prediction and alignment data
[ ]jp_o5Mden4.concise.fasta2015-04-17 19:05 3.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_o5Mden4.concise.pdf2015-04-17 19:05 20KPDF prediction and alignment data
[ ]jp_o5Mden4.concise.ps2015-04-17 19:05 316KPrediction: coiled-coil, solvent, alignment
[ ]jp_o5Mden4.fasta2015-04-17 18:58 59 Input query sequence in FASTA format
[ ]jp_o5Mden4.full_MSA.fasta2015-04-17 19:05 7.8KFull MSA before JPred filters in FASTA
[TXT]jp_o5Mden4.full_MSA.fasta.noGaps.html2015-04-17 19:05 20KFull MSA before JPred filters in FASTA
[TXT]jp_o5Mden4.full_MSA.fasta.withGaps.html2015-04-17 19:05 29KFull MSA before JPred filters in FASTA
[ ]jp_o5Mden4.hmm2015-04-17 19:05 8.6KHHMer2 profile of the alignment
[TXT]jp_o5Mden4.html2015-04-17 19:05 16KHTML prediction and alignment data
[ ]jp_o5Mden4.input2015-04-17 17:38 53 Raw input data for analysis
[ ]jp_o5Mden4.jalview2015-04-17 19:05 1.7KJalview annotation file for alignment
[ ]jp_o5Mden4.jnet2015-04-17 19:05 1.8KJnet secondary structure output
[TXT]jp_o5Mden4.profile2015-04-17 19:03 7.8KPSIBLAST profile from alignment
[ ]jp_o5Mden4.pssm2015-04-17 19:05 9.9KPSIBLAST PSSM for Jnet
[TXT]jp_o5Mden4.results.html2016-02-15 12:20 30KJPred results page
[TXT]jp_o5Mden4.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_o5Mden4.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_o5Mden4.seq2015-04-17 17:38 59 Sequence data file
[TXT]jp_o5Mden4.simple.html2015-04-17 19:05 1.0KBrief HTML: sequence and prediction only
[TXT]jp_o5Mden4.svg.html2015-04-17 19:05 22KJalview SVG summary of results
[ ]jp_o5Mden4.tar.gz2015-04-17 19:05 52KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.