JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:05 4.7KJPred server log file
[TXT]README2016-02-15 12:20 2.1KResults file descriptions
[TXT]d3arce_.name2015-04-17 17:00 0 Job name flag file
[ ]jp_01b_5s9.align2015-04-17 18:05 5.3KPSIBLAST alignment in FASTA format
[TXT]jp_01b_5s9.als2015-04-17 18:05 2.0KAlscript command file for PS/PDF output
[ ]jp_01b_5s9.blast.gz2015-04-17 18:05 20KCompressed PSIBLAST output file
[TXT]jp_01b_5s9.coils.csv2015-04-17 18:05 516 COILS output in CSV format
[ ]jp_01b_5s9.coilseq.lupas_142015-04-17 18:05 3.4KCOILS output, window length 14
[ ]jp_01b_5s9.coilseq.lupas_212015-04-17 18:05 3.4KCOILS output, window length 21
[ ]jp_01b_5s9.coilseq.lupas_282015-04-17 18:05 3.4KCOILS output, window length 28
[ ]jp_01b_5s9.concise2015-04-17 18:05 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_01b_5s9.concise.blc2015-04-17 18:05 6.5KBLC format prediction and alignment data
[ ]jp_01b_5s9.concise.fasta2015-04-17 18:05 6.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_01b_5s9.concise.pdf2015-04-17 18:05 40KPDF prediction and alignment data
[ ]jp_01b_5s9.concise.ps2015-04-17 18:05 724KPrediction: coiled-coil, solvent, alignment
[ ]jp_01b_5s9.fasta2015-04-17 18:01 95 Input query sequence in FASTA format
[ ]jp_01b_5s9.full_MSA.fasta2015-04-17 18:05 17KFull MSA before JPred filters in FASTA
[TXT]jp_01b_5s9.full_MSA.fasta.noGaps.html2015-04-17 18:05 34KFull MSA before JPred filters in FASTA
[TXT]jp_01b_5s9.full_MSA.fasta.withGaps.html2015-04-17 18:05 47KFull MSA before JPred filters in FASTA
[ ]jp_01b_5s9.hmm2015-04-17 18:05 15KHHMer2 profile of the alignment
[TXT]jp_01b_5s9.html2015-04-17 18:05 24KHTML prediction and alignment data
[ ]jp_01b_5s9.input2015-04-17 17:00 88 Raw input data for analysis
[ ]jp_01b_5s9.jalview2015-04-17 18:05 2.5KJalview annotation file for alignment
[ ]jp_01b_5s9.jnet2015-04-17 18:05 3.0KJnet secondary structure output
[TXT]jp_01b_5s9.profile2015-04-17 18:02 13KPSIBLAST profile from alignment
[ ]jp_01b_5s9.pssm2015-04-17 18:05 17KPSIBLAST PSSM for Jnet
[TXT]jp_01b_5s9.results.html2016-02-15 12:20 44KJPred results page
[TXT]jp_01b_5s9.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_01b_5s9.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_01b_5s9.seq2015-04-17 17:00 95 Sequence data file
[TXT]jp_01b_5s9.simple.html2015-04-17 18:05 1.2KBrief HTML: sequence and prediction only
[TXT]jp_01b_5s9.svg.html2015-04-17 18:05 36KJalview SVG summary of results
[ ]jp_01b_5s9.tar.gz2015-04-17 18:05 98KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.