JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:12 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d3i94a_.name2015-04-17 19:28 0 Job name flag file
[ ]jp_ow1si13.align2015-04-17 22:11 77KPSIBLAST alignment in FASTA format
[TXT]jp_ow1si13.als2015-04-17 22:11 3.4KAlscript command file for PS/PDF output
[ ]jp_ow1si13.blast.gz2015-04-17 22:11 273KCompressed PSIBLAST output file
[TXT]jp_ow1si13.coils.csv2015-04-17 22:11 1.5KCOILS output in CSV format
[ ]jp_ow1si13.coilseq.lupas_142015-04-17 22:11 10KCOILS output, window length 14
[ ]jp_ow1si13.coilseq.lupas_212015-04-17 22:11 10KCOILS output, window length 21
[ ]jp_ow1si13.coilseq.lupas_282015-04-17 22:11 10KCOILS output, window length 28
[ ]jp_ow1si13.concise2015-04-17 22:11 159KPrediction: coiled-coil, solvent, alignment
[ ]jp_ow1si13.concise.blc2015-04-17 22:11 79KBLC format prediction and alignment data
[ ]jp_ow1si13.concise.fasta2015-04-17 22:11 79KPrediction: coiled-coil, solvent, alignment
[ ]jp_ow1si13.concise.pdf2015-04-17 22:12 547KPDF prediction and alignment data
[ ]jp_ow1si13.concise.ps2015-04-17 22:11 9.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_ow1si13.fasta2015-04-17 22:05 259 Input query sequence in FASTA format
[ ]jp_ow1si13.full_MSA.fasta2015-04-17 22:11 484KFull MSA before JPred filters in FASTA
[TXT]jp_ow1si13.full_MSA.fasta.noGaps.html2015-04-17 22:12 160KFull MSA before JPred filters in FASTA
[TXT]jp_ow1si13.full_MSA.fasta.withGaps.html2015-04-17 22:12 2.0MFull MSA before JPred filters in FASTA
[ ]jp_ow1si13.hmm2015-04-17 22:11 46KHHMer2 profile of the alignment
[TXT]jp_ow1si13.html2015-04-17 22:11 157KHTML prediction and alignment data
[ ]jp_ow1si13.input2015-04-17 19:28 250 Raw input data for analysis
[ ]jp_ow1si13.jalview2015-04-17 22:11 5.7KJalview annotation file for alignment
[ ]jp_ow1si13.jnet2015-04-17 22:11 8.9KJnet secondary structure output
[TXT]jp_ow1si13.profile2015-04-17 22:10 39KPSIBLAST profile from alignment
[ ]jp_ow1si13.pssm2015-04-17 22:11 52KPSIBLAST PSSM for Jnet
[TXT]jp_ow1si13.results.html2016-02-15 12:21 105KJPred results page
[TXT]jp_ow1si13.results_jalview.html2016-02-24 17:18 13KJalview results options
[TXT]jp_ow1si13.results_jalview_app.html2016-02-24 17:18 16KHTML prediction and alignment data
[ ]jp_ow1si13.seq2015-04-17 19:28 259 Sequence data file
[TXT]jp_ow1si13.simple.html2015-04-17 22:11 1.7KBrief HTML: sequence and prediction only
[TXT]jp_ow1si13.svg.html2015-04-17 22:12 97KJalview SVG summary of results
[ ]jp_ow1si13.tar.gz2015-04-17 22:12 1.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.