JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:43 4.7KJPred server log file
[TXT]README2016-02-15 12:21 2.1KResults file descriptions
[TXT]d4j9yb_.name2015-04-17 19:34 0 Job name flag file
[ ]jp_zpBRyec.align2015-04-17 22:43 8.3KPSIBLAST alignment in FASTA format
[TXT]jp_zpBRyec.als2015-04-17 22:43 1.8KAlscript command file for PS/PDF output
[ ]jp_zpBRyec.blast.gz2015-04-17 22:43 70KCompressed PSIBLAST output file
[TXT]jp_zpBRyec.coils.csv2015-04-17 22:43 564 COILS output in CSV format
[ ]jp_zpBRyec.coilseq.lupas_142015-04-17 22:43 3.7KCOILS output, window length 14
[ ]jp_zpBRyec.coilseq.lupas_212015-04-17 22:43 3.7KCOILS output, window length 21
[ ]jp_zpBRyec.coilseq.lupas_282015-04-17 22:43 3.7KCOILS output, window length 28
[ ]jp_zpBRyec.concise2015-04-17 22:43 19KPrediction: coiled-coil, solvent, alignment
[ ]jp_zpBRyec.concise.blc2015-04-17 22:43 9.6KBLC format prediction and alignment data
[ ]jp_zpBRyec.concise.fasta2015-04-17 22:43 9.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_zpBRyec.concise.pdf2015-04-17 22:43 59KPDF prediction and alignment data
[ ]jp_zpBRyec.concise.ps2015-04-17 22:43 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_zpBRyec.fasta2015-04-17 22:19 103 Input query sequence in FASTA format
[ ]jp_zpBRyec.full_MSA.fasta2015-04-17 22:43 77KFull MSA before JPred filters in FASTA
[TXT]jp_zpBRyec.full_MSA.fasta.noGaps.html2015-04-17 22:43 81KFull MSA before JPred filters in FASTA
[TXT]jp_zpBRyec.full_MSA.fasta.withGaps.html2015-04-17 22:43 279KFull MSA before JPred filters in FASTA
[ ]jp_zpBRyec.hmm2015-04-17 22:43 17KHHMer2 profile of the alignment
[TXT]jp_zpBRyec.html2015-04-17 22:43 33KHTML prediction and alignment data
[ ]jp_zpBRyec.input2015-04-17 19:34 96 Raw input data for analysis
[ ]jp_zpBRyec.jalview2015-04-17 22:43 2.6KJalview annotation file for alignment
[ ]jp_zpBRyec.jnet2015-04-17 22:43 3.3KJnet secondary structure output
[TXT]jp_zpBRyec.profile2015-04-17 22:41 15KPSIBLAST profile from alignment
[ ]jp_zpBRyec.pssm2015-04-17 22:43 19KPSIBLAST PSSM for Jnet
[TXT]jp_zpBRyec.results.html2016-02-15 12:21 46KJPred results page
[TXT]jp_zpBRyec.results_jalview.html2016-02-24 17:19 13KJalview results options
[TXT]jp_zpBRyec.results_jalview_app.html2016-02-24 17:19 16KHTML prediction and alignment data
[ ]jp_zpBRyec.seq2015-04-17 19:34 103 Sequence data file
[TXT]jp_zpBRyec.simple.html2015-04-17 22:43 1.1KBrief HTML: sequence and prediction only
[TXT]jp_zpBRyec.svg.html2015-04-17 22:43 38KJalview SVG summary of results
[ ]jp_zpBRyec.tar.gz2015-04-17 22:43 190KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.