- FastaReader - Class in compbio.data.sequence
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Reads files with FASTA formatted sequences.
- FastaReader(String) - Constructor for class compbio.data.sequence.FastaReader
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Header data can contain non-ASCII symbols and read in UTF8
- FastaReader(InputStream) - Constructor for class compbio.data.sequence.FastaReader
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This class will not close the incoming stream! So the client should do
so.
- FastaSequence - Class in compbio.data.sequence
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A FASTA formatted sequence.
- FastaSequence() - Constructor for class compbio.data.sequence.FastaSequence
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- FastaSequence(String, String) - Constructor for class compbio.data.sequence.FastaSequence
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Upon construction the any whitespace characters are removed from the
sequence
- file - Variable in exception compbio.data.sequence.UnknownFileFormatException
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- floatP - Static variable in class compbio.data.sequence.RNAStructReader
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- freeEnergyP - Static variable in class compbio.data.sequence.RNAStructReader
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- freqP - Static variable in class compbio.data.sequence.RNAStructReader
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- from - Variable in class compbio.data.sequence.Range
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- furtherDetails - Variable in class compbio.metadata.Option
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