A B C D E F G H I J L M N O P R S T U V W

O

oneLineAlignmentLength - Static variable in class compbio.data.sequence.ClustalAlignmentUtil

openInputStream(String) - Static method in class compbio.data.sequence.SequenceUtil

Reads and parses Fasta or Clustal formatted file into a list of FastaSequence objects

Option<T> - Class in compbio.metadata

Command line option/flag or multiple exclusive options with no value.

Option() - Constructor for class compbio.metadata.Option

Option(String, String) - Constructor for class compbio.metadata.Option

option - Variable in class compbio.metadata.Preset

optionNames - Variable in class compbio.metadata.Option

options - Variable in class compbio.metadata.RunnerConfig

A B C D E F G H I J L M N O P R S T U V W