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N

name - Variable in class compbio.metadata.Option

name - Variable in class compbio.metadata.Preset

newEmptyScore(Enum<?>) - Static method in class compbio.data.sequence.RNAStructReader

newInstance(List<String>, List<TreeSet<Score>>) - Static method in class compbio.data.sequence.RNAStructScoreManager

newInstance(Map<String, Set<Score>>) - Static method in class compbio.data.sequence.ScoreManager

newInstanceSingleScore(Map<String, Score>) - Static method in class compbio.data.sequence.ScoreManager

newInstanceSingleSequence(Set<Score>) - Static method in class compbio.data.sequence.ScoreManager

newLimitExceeded(Limit<?>, List<FastaSequence>) - Static method in exception compbio.metadata.LimitExceededException

newSetScore(Enum<?>, List<Float>) - Static method in class compbio.data.sequence.RNAStructReader

next() - Method in class compbio.data.sequence.FastaReader

Reads the next FastaSequence from the input

NON_AA - Static variable in class compbio.data.sequence.SequenceUtil

inversion of AA pattern

NON_NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil

Non nucleotide

NONWORD - Static variable in class compbio.data.sequence.SequenceUtil

Non word

notData - Static variable in class compbio.data.sequence.RNAStructReader

NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil

Nucleotides a, t, g, c, u

NUMBER_FORMAT - Static variable in class compbio.data.sequence.Score

numberOfLetters() - Method in class compbio.metadata.Limit

numberOfSequencesAllowed - Variable in exception compbio.metadata.LimitExceededException

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