A B C D E F G H I J L M N O P R S T U V W

P

Parameter<T> - Class in compbio.metadata

A single value containing an option supported by the web service e.g.

Parameter() - Constructor for class compbio.metadata.Parameter

Parameter(String, String) - Constructor for class compbio.metadata.Parameter

parameters - Variable in class compbio.metadata.RunnerConfig

parseIUPredDomains(Scanner) - Static method in class compbio.data.sequence.SequenceUtil

# P53_HUMA Number of globular domains: 2 globular domain 1.

parseIUPredScores(Scanner) - Static method in class compbio.data.sequence.SequenceUtil

parseRanges(Enum, String) - Static method in class compbio.data.sequence.SequenceUtil

Parsing: # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343, 350-391, 429-485, 497-506, 539-547 # REM465 355-368 # HOTLOOPS 190-204

position - Variable in class compbio.metadata.ChunkHolder

possibleValues - Variable in class compbio.metadata.Parameter

preset - Variable in class compbio.metadata.Limit

Preset<T> - Class in compbio.metadata

Collection of Options and Parameters with their values

Preset() - Constructor for class compbio.metadata.Preset

preset - Variable in class compbio.metadata.PresetManager

PresetManager<T> - Class in compbio.metadata

Collection of presets and methods to manipulate them @see Preset

PresetManager() - Constructor for class compbio.metadata.PresetManager

prmSeparator - Variable in class compbio.metadata.RunnerConfig

program - Variable in class compbio.data.sequence.AlignmentMetadata

Program - Enum in compbio.data.sequence

The list of programmes that can produce alignments

Program() - Constructor for enum compbio.data.sequence.Program

ps - Static variable in class compbio.data.sequence.RNAStructReader

PStructP - Static variable in class compbio.data.sequence.RNAStructReader

A B C D E F G H I J L M N O P R S T U V W