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D

deepCleanSequence(String) - Static method in class compbio.data.sequence.SequenceUtil

Removes all special characters and digits as well as whitespace chars from the sequence

DEFAULT_COLUMN_SCORE - Static variable in enum compbio.data.sequence.SMERFSConstraints

Default column scoring schema

DEFAULT_GAP_THRESHOLD - Static variable in enum compbio.data.sequence.SMERFSConstraints

Default gap threshold value for SMERFS algorithm

DEFAULT_WINDOW_SIZE - Static variable in enum compbio.data.sequence.SMERFSConstraints

Default window size value for SMERFS algorithm

defaultValue - Variable in class compbio.metadata.Option

DELIM - Variable in class compbio.data.sequence.FastaReader

Delimiter for the scanner

description - Variable in class compbio.metadata.Option

description - Variable in class compbio.metadata.Preset

DIGIT - Static variable in class compbio.data.sequence.SequenceUtil

A digit

DisemblResult - Enum in compbio.data.sequence

DisemblResult() - Constructor for enum compbio.data.sequence.DisemblResult

DisorderMethod - Enum in compbio.data.sequence

DisorderMethod() - Constructor for enum compbio.data.sequence.DisorderMethod

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