A B C D E F G H I J L M N O P R S T U V W

W

WHITE_SPACE - Static variable in class compbio.data.sequence.SequenceUtil

A whitespace character: [\t\n\x0B\f\r]

write(TreeSet<Score>, Writer) - Static method in class compbio.data.sequence.Score

Outputs the List of Score objects into the Output stream.

writeClustal(OutputStream, List<FastaSequence>, char) - Static method in class compbio.data.sequence.SequenceUtil

writeClustalAlignment(Writer, Alignment) - Static method in class compbio.data.sequence.ClustalAlignmentUtil

Write Clustal formatted alignment Limitations: does not record the consensus.

writeFasta(OutputStream, List<FastaSequence>, int) - Static method in class compbio.data.sequence.SequenceUtil

Writes list of FastaSequeces into the outstream formatting the sequence so that it contains width chars on each line

writeFasta(OutputStream, List<FastaSequence>) - Static method in class compbio.data.sequence.SequenceUtil

Writes FastaSequence in the file, each sequence will take one line only

writeFastaKeepTheStream(OutputStream, List<FastaSequence>, int) - Static method in class compbio.data.sequence.SequenceUtil

writeOut(Writer) - Method in class compbio.data.sequence.ScoreManager.ScoreHolder

writeOut(Writer) - Method in class compbio.data.sequence.ScoreManager

WrongParameterException - Exception in compbio.metadata

WrongParameterException is thrown wherever the RunnerConfig object does not match the actual runnable or then attempting to set the value of Argument to invalid value.

WrongParameterException(Option<?>) - Constructor for exception compbio.metadata.WrongParameterException

WrongParameterException(String) - Constructor for exception compbio.metadata.WrongParameterException

WrongParameterException(Throwable) - Constructor for exception compbio.metadata.WrongParameterException

WrongParameterException(String, Throwable) - Constructor for exception compbio.metadata.WrongParameterException

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