June 2005 Commit Log

Number of Commits:
135
Number of Active Developers:
2
andrew 2005-06-30 15:46

Formatting changes

34934 lines of code changed in:

andrew 2005-06-30 15:44

Not used in Jalview

0 lines of code changed in:

andrew 2005-06-30 14:26

Put all libraries in Project space

44 lines of code changed in:

andrew 2005-06-30 11:43

dont check disk space, redirect stdout

30 lines of code changed in:

andrew 2005-06-30 11:42

wsld missing from cvs archive

0 lines of code changed in:

andrew 2005-06-20 17:10

readme

0 lines of code changed in:

andrew 2005-06-17 16:12

Target is 1.4

1610 lines of code changed in:

jimp 2005-06-16 18:45

jalview-dev@jalview.org is the right email address?

1 lines of code changed in:

jimp 2005-06-16 18:44

renamed menu for jPred to Jnet.

4 lines of code changed in:

jimp 2005-06-16 18:44

separated alignment menu bits.

390 lines of code changed in:

jimp 2005-06-16 18:42

more doco.

132 lines of code changed in:

jimp 2005-06-16 18:41

moved clustal to clustalw

1 lines of code changed in:

jimp 2005-06-16 18:39

lots of tidying in doco.

36 lines of code changed in:

andrew 2005-06-16 16:56

Moved to new repository

0 lines of code changed in:

andrew 2005-06-16 16:53

moved to new repository

0 lines of code changed in:

andrew 2005-06-16 16:40

InstallAnywhere config

2440 lines of code changed in:

jimp 2005-06-16 15:50

better clustalw reference

33 lines of code changed in:

jimp 2005-06-16 15:21

export moved to its own file.

0 lines of code changed in:

jimp 2005-06-16 15:21

export alignment
graphics

34 lines of code changed in:

jimp 2005-06-16 15:14

feredoxin startup alignment with a tree.

0 lines of code changed in:

jimp 2005-06-16 14:50

more menu doco.

171 lines of code changed in:

andrew 2005-06-16 14:32

dont add sequence twice to new group

9 lines of code changed in:

andrew 2005-06-16 14:31

Sort Groups modified

54 lines of code changed in:

andrew 2005-06-16 10:48

dont convert to uppercase

2 lines of code changed in:

andrew 2005-06-16 10:35

textarea replaces textfield - can cut and paste sequence from seqpanel

60 lines of code changed in:

andrew 2005-06-16 10:34

remove gaps applies to selected area

44 lines of code changed in:

andrew 2005-06-15 16:06

use .jalview.uniprot.xml

3 lines of code changed in:

andrew 2005-06-15 16:05

Check colours not null

1 lines of code changed in:

andrew 2005-06-15 16:04

check colourscheme is not null

5 lines of code changed in:

andrew 2005-06-15 16:03

paintrefresher

1 lines of code changed in:

andrew 2005-06-15 16:02

add/remove updated

4 lines of code changed in:

andrew 2005-06-15 16:01

Column selection changed

39 lines of code changed in:

andrew 2005-06-15 15:59

REmove commented out lines

1 lines of code changed in:

andrew 2005-06-15 15:59

allow for fastpaint

4 lines of code changed in:

andrew 2005-06-15 15:56

add / remove editable columns

38 lines of code changed in:

andrew 2005-06-15 15:55

Tooltip changed

3 lines of code changed in:

jimp 2005-06-15 14:05

first jalarchive entry.

16 lines of code changed in:

andrew 2005-06-14 17:37

change name of uniprot file

1 lines of code changed in:

andrew 2005-06-14 17:37

add version

1 lines of code changed in:

andrew 2005-06-14 17:36

remove system.out

0 lines of code changed in:

andrew 2005-06-14 17:36

add version

26 lines of code changed in:

jimp 2005-06-14 17:31

de-os-specificised some bits. Commented the file association entries
in jnlp for the moment.

12 lines of code changed in:

jimp 2005-06-14 17:29

removes jarsign.

0 lines of code changed in:

jimp 2005-06-14 17:29

help file bits.

131 lines of code changed in:

jimp 2005-06-14 16:57

pad-1 gaps fixed.

2 lines of code changed in:

jimp 2005-06-14 16:44

slight modification to srs query so it takes both uniprot accessions and names

1 lines of code changed in:

jimp 2005-06-14 16:44

Arbitrary decision to keep friendly id name when reading in uniprot headered fastA files.

12 lines of code changed in:

andrew 2005-06-14 16:06

update conservation colours after edit

17 lines of code changed in:

andrew 2005-06-14 16:05

ToolTip updated

26 lines of code changed in:

andrew 2005-06-14 16:04

add value to conservation mouseover

1 lines of code changed in:

andrew 2005-06-14 16:03

if seq is null, dont check pdb

1 lines of code changed in:

andrew 2005-06-14 16:03

mouse pressed moved to mouseclicked

70 lines of code changed in:

andrew 2005-06-14 16:02

Deselect sets annotationPanel activeres null

1 lines of code changed in:

andrew 2005-06-14 16:01

reset if clustalX colouring

12 lines of code changed in:

andrew 2005-06-14 16:00

Dont delete nextSeq

0 lines of code changed in:

andrew 2005-06-14 12:33

PaintRefresher must be sent alignment

8 lines of code changed in:

andrew 2005-06-14 12:33

super.paintComponent

1 lines of code changed in:

andrew 2005-06-14 12:32

Set background colour of applet RGB

16 lines of code changed in:

andrew 2005-06-14 11:44

protected now public

23 lines of code changed in:

andrew 2005-06-14 11:44

Double click to launch file browser

1 lines of code changed in:

andrew 2005-06-14 11:43

tooltips instant (hopefully)

3 lines of code changed in:

andrew 2005-06-14 11:41

No spaces allowed in sequence name

9 lines of code changed in:

andrew 2005-06-14 11:41

Load/Save trees

85 lines of code changed in:

andrew 2005-06-14 11:41

Returns TreePanel when opening Newick

6 lines of code changed in:

andrew 2005-06-14 11:40

Saves trees

4129 lines of code changed in:

jimp 2005-06-13 15:23

null pointer fix.

3 lines of code changed in:

andrew 2005-06-13 13:04

uses paintrefresher

1 lines of code changed in:

andrew 2005-06-13 13:04

clustal probs

2 lines of code changed in:

andrew 2005-06-13 12:35

quit saves screen size

10 lines of code changed in:

andrew 2005-06-13 12:34

Updates checkboxes on load

12 lines of code changed in:

andrew 2005-06-13 12:34

PaintRefresh changed

130 lines of code changed in:

andrew 2005-06-13 12:31

protected now public

15 lines of code changed in:

andrew 2005-06-13 12:30

Quit actionPerformed

2 lines of code changed in:

andrew 2005-06-13 12:28

Get colourScheme with seqs and width

9 lines of code changed in:

andrew 2005-06-10 14:22

SeqFetcher modified

0 lines of code changed in:

andrew 2005-06-10 14:21

remove imports

0 lines of code changed in:

andrew 2005-06-10 14:19

Fastpaint is false initially

1 lines of code changed in:

andrew 2005-06-10 13:53

latest

0 lines of code changed in:

jimp 2005-06-10 10:43

added logs.Castor.level

1 lines of code changed in:

jimp 2005-06-10 10:42

added castor logger configuration.

10 lines of code changed in:

andrew 2005-06-10 10:26

Remove imports

0 lines of code changed in:

andrew 2005-06-10 09:53

set conservation/consensus in constructor

1 lines of code changed in:

jimp 2005-06-10 08:27

removed exception name from server error state (to not alarm the casual user).

29 lines of code changed in:

andrew 2005-06-09 17:29

removed

0 lines of code changed in:

andrew 2005-06-09 17:28

deleted

0 lines of code changed in:

andrew 2005-06-09 17:27

moved from lib

0 lines of code changed in:

andrew 2005-06-09 17:27

for obfuscating

0 lines of code changed in:

andrew 2005-06-09 16:28

needed for applet search

11833 lines of code changed in:

andrew 2005-06-09 16:24

Build Applet added

48 lines of code changed in:

andrew 2005-06-09 10:59

Monospaced

2 lines of code changed in:

andrew 2005-06-09 10:58

Warn if Textarea limit has been reached

17 lines of code changed in:

andrew 2005-06-08 18:06

replace space

1 lines of code changed in:

andrew 2005-06-08 17:37

group recalc conserve

8 lines of code changed in:

andrew 2005-06-08 17:36

recalc group conserve

25 lines of code changed in:

andrew 2005-06-08 17:23

if missing forward slash

14 lines of code changed in:

andrew 2005-06-08 17:22

Recalc accelerated

351 lines of code changed in:

jimp 2005-06-08 16:35

style change.

2 lines of code changed in:

jimp 2005-06-08 16:32

heading

1 lines of code changed in:

jimp 2005-06-08 16:28

punctuation (sorry ;-)

2 lines of code changed in:

jimp 2005-06-08 16:27

grammar.

3 lines of code changed in:

jimp 2005-06-08 16:18

unterminated ul

3 lines of code changed in:

jimp 2005-06-08 15:21

nicer help.

123 lines of code changed in:

andrew 2005-06-08 15:20

Sets sequence features

2 lines of code changed in:

andrew 2005-06-08 15:10

spelling

9 lines of code changed in:

andrew 2005-06-08 15:09

Spelling

152 lines of code changed in:

andrew 2005-06-08 14:41

Formatted source

36316 lines of code changed in:

andrew 2005-06-08 14:22

GPL

340 lines of code changed in:

andrew 2005-06-08 14:14

GPL license added

5880 lines of code changed in:

andrew 2005-06-08 14:12

*** empty log message ***

0 lines of code changed in:

andrew 2005-06-08 13:32

Add email to about

5 lines of code changed in:

jimp 2005-06-07 18:06

more truthful comment.

1 lines of code changed in:

jimp 2005-06-07 14:39

quickie build instructions.

55 lines of code changed in:

jimp 2005-06-07 14:20

very basic code convention. no licensing/stripping yet.

376 lines of code changed in:

jimp 2005-06-07 14:18

better code convention name

1 lines of code changed in:

jimp 2005-06-07 14:09

jalopy is used for sourcescrub target of build.xml (sourcescrub is not
a standard target name;-)

7102 lines of code changed in:

jimp 2005-06-07 14:04

removed signature for this jar

0 lines of code changed in:

jimp 2005-06-07 14:02

loads of changes. Jalopy source formatting, better WS client build (but still not automatic) and jar building (still not optimised yet).

31 lines of code changed in:

jimp 2005-06-07 14:01

added a couple of debug statements for unix browser launching problems.

13 lines of code changed in:

andrew 2005-06-06 11:00

closes if accepted

46 lines of code changed in:

jimp 2005-06-05 18:38

made error for browser configuration on unix a bit easier to see.

8 lines of code changed in:

jimp 2005-06-05 18:36

firefox now default for unixen.

3 lines of code changed in:

jimp 2005-06-05 18:01

more subtle rearrangements

374 lines of code changed in:

jimp 2005-06-03 14:16

Reinstated 'create tree from selected region only' with better indication that only part of an alignment was used to calculate the tree.

83 lines of code changed in:

jimp 2005-06-02 16:27

tidied the exceptions and ws server error behaviour

69 lines of code changed in:

andrew 2005-06-02 15:56

Menus

275 lines of code changed in:

andrew 2005-06-02 13:25

new

0 lines of code changed in:

andrew 2005-06-02 13:24

*** empty log message ***

0 lines of code changed in:

andrew 2005-06-02 12:07

Warn if URL not found

1 lines of code changed in:

andrew 2005-06-02 12:06

Cut and paste changed

1 lines of code changed in:

andrew 2005-06-02 12:06

Reverse order for windows, readin from url

49 lines of code changed in:

andrew 2005-06-02 12:05

startup file is jalview.org

1 lines of code changed in:

andrew 2005-06-02 12:04

Name of xml file changed

6 lines of code changed in:

andrew 2005-06-02 12:02

Check startup file is not null

2 lines of code changed in:

jimp 2005-06-02 11:16

minor changes to make jalopy happy

4 lines of code changed in:

jimp 2005-06-02 11:16

minor changes to try and make jalopy happy

1 lines of code changed in:

May 2005 »

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