March 2007 Commit Log

Number of Commits:
40
Number of Active Developers:
2
andrew 2007-03-27 10:14

Pick atom highlighted

42 lines of code changed in:

andrew 2007-03-27 10:02

Updated PDB loading params

44 lines of code changed in:

andrew 2007-03-26 18:29

Jmol calls user colours

17 lines of code changed in:

andrew 2007-03-26 18:28

Jalview colour schemes added

190 lines of code changed in:

andrew 2007-03-26 18:25

Add seq mapping for multiple seq 2 pdbs

6 lines of code changed in:

andrew 2007-03-26 18:25

Menu changes

3 lines of code changed in:

jprocter 2007-03-26 15:31

fix single sequence features added rendering bug.

458 lines of code changed in:

jprocter 2007-03-26 15:19

PDB residue numberings transfered and alignment view refreshed to update featureRenderer.

1232 lines of code changed in:

jprocter 2007-03-26 15:15

grammar.

585 lines of code changed in:

andrew 2007-03-23 17:26

updates to console

61 lines of code changed in:

andrew 2007-03-23 17:25

slide is transparent to hidden columns

1 lines of code changed in:

jprocter 2007-03-23 16:36

generalised feature attribute parsing slightly (no embl specs to work from yet)

7 lines of code changed in:

jprocter 2007-03-23 15:41

bugfix for 1.1 conversion.

298 lines of code changed in:

jprocter 2007-03-23 15:40

reenable canceldas after a cancel and subsequence fetch

837 lines of code changed in:

jprocter 2007-03-23 15:39

lastSeq==null to force refresh of sequencefeature array reference

789 lines of code changed in:

jprocter 2007-03-23 15:38

removed Iterator usage.

39 lines of code changed in:

andrew 2007-03-23 11:45

run and halt buttons must have listeners added

5 lines of code changed in:

andrew 2007-03-23 10:47

loadingFromArchive flag added

21 lines of code changed in:

andrew 2007-03-23 10:46

run halt hidden, help moved to menu item for stupid mac users

41 lines of code changed in:

andrew 2007-03-22 18:33

save structures

24 lines of code changed in:

andrew 2007-03-22 18:33

Commented out userDefColours for compilation. Class now redundant anyway

1 lines of code changed in:

andrew 2007-03-22 18:32

Now a JPanel, plus some modifications

20 lines of code changed in:

andrew 2007-03-22 18:31

Check exploded pos is not the same as current frame

3 lines of code changed in:

andrew 2007-03-22 18:31

Set gatherViewsHere false when making a new tab

8 lines of code changed in:

andrew 2007-03-22 18:30

Saves structures

107 lines of code changed in:

andrew 2007-03-22 18:30

Jalview colours added to Jmol

412 lines of code changed in:

andrew 2007-03-22 18:29

Saves Jmol status

826 lines of code changed in:

jprocter 2007-03-19 15:48

DAS features mapped to local reference frame

0 lines of code changed in:

jprocter 2007-03-19 15:41

translate aligned cDNA to aligned peptide

581 lines of code changed in:

jprocter 2007-03-19 15:40

retrieve and parse EMBL records to view exons.

112 lines of code changed in:

jprocter 2007-03-19 14:36

convenience method to get visible selected region.

1349 lines of code changed in:

jprocter 2007-03-19 14:05

null exception when annotation created with no description.

2 lines of code changed in:

jprocter 2007-03-19 14:02

New method for mapping from common database sources to canonical jalview name. Added EMBL to list of mappings between internal DBRefSources and das coordinate system.

27 lines of code changed in:

jprocter 2007-03-19 13:59

note about selenocystine.

1 lines of code changed in:

jprocter 2007-03-19 13:47

disambiguate jalview.datamodel.Mapping from castor's Mapping object.

0 lines of code changed in:

jprocter 2007-03-19 13:44

initial support for EMBL file parsing.

711 lines of code changed in:

jprocter 2007-03-19 13:43

equals operation used for canonicalisation of DBRefList (rather than explict 'equals' on attributes)

72 lines of code changed in:

jprocter 2007-03-19 13:42

mapping implemented by MapList added to DBRefEntry.

691 lines of code changed in:

jprocter 2007-03-19 13:38

javadoc typo

0 lines of code changed in:

jprocter 2007-03-19 13:37

copy constructor

97 lines of code changed in:

February 2007 »

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