reflect the state of a failed Job in the GUI (e.g. trying to align protein seqs with a nucleotide parameter set)
10 lines of code changed in:
patch to prevent NPE - which occurs if no features are available (see JAL-650)
0 lines of code changed in:
clean the dist directory before copying Jars
7 lines of code changed in:
update jmol
0 lines of code changed in:
added colour by label to feature type colourspec and gff statement to allow mixed jalview colour specs and gff feature specs
154 lines of code changed in:
reinstated the splitpanes with better size placement, and made tooltips button labels more helpful
29 lines of code changed in:
fix the javac issue for JmolApplet references in application build
312 lines of code changed in:
update Jmol jar ref
1 lines of code changed in:
appletgui should ve excluded from normal application build
1 lines of code changed in:
streamlined app and applet jmol console + event handling via component listener
65 lines of code changed in:
refactored to remove App reference in Applet (JAL-638)
61 lines of code changed in:
refactored to remove App reference in Applet (JAL-638)
37 lines of code changed in:
patched Jmol and code for embedding JmolAppConsole in a JPanel (JAL-638)
1 lines of code changed in:
patched Jmol and code for embedding JmolAppConsole in a JPanel (JAL-638)
142 lines of code changed in:
jabaws, not jaba
1 lines of code changed in:
threaded off ws menu building to avoid initial pause when services are discovered
108 lines of code changed in:
properly report invalid jobs (server doesn't support service, seuqence set too big/wide, invalid input parameters) in a pop up dialog
217 lines of code changed in:
early bail out for long urls, and threaded off group url construction: JAL-402
104 lines of code changed in:
wrap preset description tooltips
3 lines of code changed in:
remove duplicate host URLs in service list when not indexing services by host
7 lines of code changed in:
wrap tooltips and revise layout (JAL-644)
73 lines of code changed in:
wrap tooltips
57 lines of code changed in:
tabbed panes for parameters and options.
17 lines of code changed in:
JAL-634 and JAL-635
104 lines of code changed in:
JAL-634
332 lines of code changed in:
todos & added simple method for other classes to monitor when fileUpdate events have occured
17 lines of code changed in:
trap NPE possiblity for trees that have no associated alignment panels (usually because they've been closed)
21 lines of code changed in:
right click opens view URL popup for both parameters and option boxes JAL-601
3 lines of code changed in:
fix for JAL-631
2 lines of code changed in:
debug warning / option dialog box display
83 lines of code changed in:
kick off the first time service parameter set discovery thread when service is discovered
5 lines of code changed in:
JAL-591
557 lines of code changed in:
new XML representation for web services parameters
869 lines of code changed in:
pass user preset arguments to job
40 lines of code changed in:
abstracted GUI to use jalview.ws.params objects (JAL-591, JAL-633). User defined presets shown in menu - which is dynamically populated
99 lines of code changed in:
abstracted GUI to use jalview.ws.params objects (JAL-591, JAL-633)
1046 lines of code changed in:
distinguish between userdefined parameter set job and preset job
7 lines of code changed in:
parameter set serialization/deserialization and preset/userdefined parameter set recall
213 lines of code changed in:
fix occasional arrayIndexOutOfBounds when sequences in subgroup are shorter than alignment width
6 lines of code changed in:
debugged option changed logic and layout
51 lines of code changed in:
update gui in gui thread - not structure loading thread
5 lines of code changed in:
increment if strings *dont* match
2 lines of code changed in:
1.1 compatibility
2 lines of code changed in:
re-implemented user prefs logic - still need to debug option change detection.
212 lines of code changed in: