May 2006 Commit Log

Number of Commits:
58
Number of Active Developers:
2
jimp 2006-05-18 10:22

added future method comment

2 lines of code changed in:

jimp 2006-05-17 17:54

added the jnetfile parameter to specify a JNet concise file to be
parsed to add jnet predictions to the first sequence in the alignment

26 lines of code changed in:

jimp 2006-05-17 17:52

added unofficial support for concise output parsing from the JNet server to extract the sequence profile.

46 lines of code changed in:

jimp 2006-05-17 17:51

refactored code for creating JNet annotations

9 lines of code changed in:

jimp 2006-05-17 17:48

Refactored code for creating annotation objects from a jnetfile object.

123 lines of code changed in:

andrew 2006-05-17 17:24

Restrict annotation panel to 50% window on load

59 lines of code changed in:

andrew 2006-05-16 14:06

graphColour, graphGroup, more relaxed annotation requirements

9 lines of code changed in:

andrew 2006-05-16 14:04

Save annotation colours, hideConsevation etc, graphGroups

59 lines of code changed in:

andrew 2006-05-16 13:01

Switch off dashedline after drawing groups

5 lines of code changed in:

andrew 2006-05-16 12:09

Remove unwanted line

2 lines of code changed in:

andrew 2006-05-16 12:08

Allow for scroller position

3 lines of code changed in:

andrew 2006-05-16 11:24

Remove system.out

1 lines of code changed in:

andrew 2006-05-16 11:23

Rearrange annotations

78 lines of code changed in:

jimp 2006-05-16 10:32

added popup warning when proxy settings must be configured.

18 lines of code changed in:

andrew 2006-05-15 15:52

Monospaced font not allowed if charWidth stretched

2 lines of code changed in:

andrew 2006-05-15 15:52

Brackets around orgin calculation

9 lines of code changed in:

andrew 2006-05-15 15:09

All or nothing drawing display char

27 lines of code changed in:

andrew 2006-05-15 14:28

EPS font width is a double, check this for monospacedFont

9 lines of code changed in:

andrew 2006-05-15 14:28

If headless, get the width of Jalview wrapped window correct

23 lines of code changed in:

jimp 2006-05-12 17:00

rearranged discoverer to dynamically update on demand

17 lines of code changed in:

andrew 2006-05-12 11:55

returns to zero degrees when stopped

18 lines of code changed in:

andrew 2006-05-12 09:44

pass viewport to fileloader, as we need to firepropertychange once sequences are added

36 lines of code changed in:

andrew 2006-05-11 16:07

Slight mod url chooser for Mac users

5 lines of code changed in:

andrew 2006-05-11 15:54

Remove commented line

0 lines of code changed in:

andrew 2006-05-11 15:54

Slightly smaller recent panel

12 lines of code changed in:

andrew 2006-05-11 15:06

Maintain numbering if remove left is undone

11 lines of code changed in:

andrew 2006-05-11 14:54

Typo

2 lines of code changed in:

andrew 2006-05-11 14:54

Invert selection

22 lines of code changed in:

andrew 2006-05-11 14:53

Recently loaded files, urls, append sequences to Alignment

331 lines of code changed in:

andrew 2006-05-10 15:06

sequenceRef added to annotation

1 lines of code changed in:

andrew 2006-05-10 14:30

Correction for sequences with start not equal to 1

6 lines of code changed in:

andrew 2006-05-10 13:59

Copy and paste of annotations with seqrefs

77 lines of code changed in:

andrew 2006-05-10 13:58

implements ClipboardOwner

10 lines of code changed in:

andrew 2006-05-10 13:57

saves and loads annotations with seqrefs

15 lines of code changed in:

andrew 2006-05-10 13:57

Draw an offscreen Image

57 lines of code changed in:

andrew 2006-05-10 13:57

Annotations must createSequenceMapping if seqRef not null

29 lines of code changed in:

andrew 2006-05-10 13:56

Create sequence mapping for annotations

55 lines of code changed in:

andrew 2006-05-10 13:56

addAnnotation with seqRef

0 lines of code changed in:

andrew 2006-05-10 13:55

Changes case to end of alignment

5 lines of code changed in:

andrew 2006-05-10 13:54

remove import

1 lines of code changed in:

andrew 2006-05-10 13:52

Save seqref with annotations

0 lines of code changed in:

andrew 2006-05-02 17:44

spelling err

1 lines of code changed in:

andrew 2006-05-02 13:24

2.08.1

63 lines of code changed in:

andrew 2006-05-02 13:23

Make nullFrame only once

9 lines of code changed in:

andrew 2006-05-02 13:23

Remove unnecessary panel, also nullFrame created only once

15 lines of code changed in:

andrew 2006-05-02 13:23

Middle mouse to compress alignment

124 lines of code changed in:

andrew 2006-05-02 13:22

Check that fontsize > 0

5 lines of code changed in:

andrew 2006-05-02 13:21

Toggle Case added

25 lines of code changed in:

andrew 2006-05-02 10:28

Toggle case added to popup menu

47 lines of code changed in:

andrew 2006-05-01 15:29

Remove edit menu if no group defined

1 lines of code changed in:

andrew 2006-05-01 15:28

Maintain original transparency setting

1 lines of code changed in:

andrew 2006-05-01 15:28

Change name to editMenu

11 lines of code changed in:

andrew 2006-05-01 14:24

If Mac, use the fillRoundRect method

31 lines of code changed in:

andrew 2006-05-01 14:23

Forces init of alignPanel if annotations added

4 lines of code changed in:

andrew 2006-05-01 14:22

Fixes redraw top of group bug

3 lines of code changed in:

andrew 2006-05-01 14:22

If no group, hide menu

6 lines of code changed in:

andrew 2006-05-01 14:22

If mac, use the fillRoundRect

30 lines of code changed in:

andrew 2006-05-01 14:22

java 1.1 compatibility

2 lines of code changed in:

April 2006 »

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