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jimp
2006-12-21 14:11
#29
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122 lines of code changed in:
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doc:
AddingGroovySupport.html (+122 -122)
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jimp
2006-12-21 14:10
#28
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1552 lines of code changed in:
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src/jalview/io:
VamsasDatastore.java (+1552 -1551)
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amwaterhouse
2006-12-21 13:50
#27
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2 lines of code changed in:
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src/jalview/datamodel:
Sequence.java (+2 -2)
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amwaterhouse
2006-12-21 13:49
#26
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1 lines of code changed in:
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src/jalview/datamodel:
SeqCigar.java (+1 -1)
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amwaterhouse
2006-12-21 13:36
#25
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2022 lines of code changed in:
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src/MCview:
AppletPDBCanvas.java (+1003 -1003),
PDBCanvas.java (+1015 -1015)
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src/jalview/datamodel:
SeqCigar.java (+4 -4)
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amwaterhouse
2006-12-21 13:35
#24
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409 lines of code changed in:
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src/jalview/datamodel:
Alignment.java (-2),
AlignmentI.java (-2)
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src/jalview/gui:
Jalview2XML.java (+1 -3),
Jalview2XML_V1.java (changed),
SequenceFetcher.java (+1 -1),
VamsasClient.java (-1)
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src/jalview/io:
JPredFile.java (+406 -406),
JnetAnnotationMaker.java (+1 -1),
VamsasDatastore.java (-1)
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src/jalview/util:
ShiftList.java (changed)
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src/jalview/ws:
JPredClient.java (-5),
JPredThread.java (changed),
MsaWSThread.java (changed)
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amwaterhouse
2006-12-21 13:34
#23
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2 lines of code changed in:
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src/jalview/appletgui:
AlignFrame.java (+1 -1),
AnnotationLabels.java (+1 -1)
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jimp
2006-12-21 13:26
#22
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1 lines of code changed in:
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src/jalview/datamodel:
SeqCigar.java (+1)
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amwaterhouse
2006-12-19 14:39
#21
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4 lines of code changed in:
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src/jalview/bin:
Cache.java (+4 -4)
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amwaterhouse
2006-12-19 14:38
#20
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0 lines of code changed in:
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src/jalview/io:
FeaturesFile.java (changed)
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andrew
2006-12-14 19:37
#19
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0 lines of code changed in:
-
src/jalview/io:
AnnotationFile.java (changed)
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andrew
2006-12-14 18:58
#18
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3 lines of code changed in:
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src/jalview/datamodel:
AlignmentAnnotation.java (+3 -2)
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andrew
2006-12-14 18:42
#17
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46 lines of code changed in:
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src/jalview/datamodel:
AlignmentAnnotation.java (+46 -30)
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src/jalview/io:
AnnotationFile.java (changed)
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andrew
2006-12-14 11:21
#16
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3 lines of code changed in:
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src/jalview/analysis:
Conservation.java (+3 -3)
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jimp
2006-12-11 16:53
#15
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0 lines of code changed in:
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src/jalview/io:
AnnotationFile.java (changed)
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jimp
2006-12-11 16:20
#14
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82 lines of code changed in:
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help/html/features:
annotationsFormat.html (+82 -82)
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src/jalview/io:
AnnotationFile.java (changed)
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andrew
2006-12-11 15:56
#13
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4 lines of code changed in:
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src/jalview/gui:
FeatureRenderer.java (+4 -1)
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andrew
2006-12-07 10:24
#12
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4 lines of code changed in:
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src/jalview/gui:
IdCanvas.java (+4 -1)
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andrew
2006-12-07 10:23
#11
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0 lines of code changed in:
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src/jalview/datamodel:
AlignmentView.java (changed)
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jimp
2006-12-06 17:29
#10
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87 lines of code changed in:
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src/jalview/gui:
VamsasClient.java (+87 -93)
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jimp
2006-12-06 17:13
#9
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2419 lines of code changed in:
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src/jalview/appletgui:
AlignFrame.java (+2419 -2419)
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jimp
2006-12-06 17:09
#8
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2668 lines of code changed in:
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src/jalview/analysis:
AlignSeq.java (+877 -844),
NJTree.java (+51 -43)
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src/jalview/appletgui:
PairwiseAlignPanel.java (+170 -170)
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src/jalview/datamodel:
BinarySequence.java (+164 -154)
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src/jalview/gui:
PairwiseAlignPanel.java (+161 -160)
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src/jalview/schemes:
ResidueProperties.java (+1245 -1217),
ScoreMatrix.java (new)
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andrew
2006-12-06 14:11
#7
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2 lines of code changed in:
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src/jalview/jbgui:
GCutAndPasteTransfer.java (+2 -2)
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andrew
2006-12-06 14:11
#6
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4 lines of code changed in:
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src/jalview/gui:
CutAndPasteTransfer.java (+4 -1)
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andrew
2006-12-06 14:10
#5
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2 lines of code changed in:
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src/jalview/gui:
Finder.java (+2 -17)
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src/jalview/jbgui:
GFinder.java (-3)
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andrew
2006-12-05 18:05
#4
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1 lines of code changed in:
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src/jalview/appletgui:
AlignmentPanel.java (+1)
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andrew
2006-12-05 17:56
#3
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39 lines of code changed in:
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src/MCview:
PDBChain.java (+4 -4)
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src/jalview/analysis:
AAFrequency.java (+4 -4),
AlignSeq.java (+2 -2),
AlignmentSorter.java (+2 -2),
Conservation.java (+2 -2),
NJTree.java (+5 -5),
SeqsetUtils.java (+4 -1)
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src/jalview/appletgui:
AlignViewport.java (+3 -3),
FeatureRenderer.java (+4 -4),
Finder.java (+1 -1),
RedundancyPanel.java (+2 -2),
SequenceRenderer.java (+2 -2),
UserDefinedColours.java (+1 -1)
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src/jalview/util:
Comparison.java (+3 -3)
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andrew
2006-12-05 17:55
#2
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310 lines of code changed in:
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src/jalview/commands:
ChangeCaseCommand.java (+1 -1),
EditCommand.java (+3 -2),
RemoveGapsCommand.java (+1 -1)
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src/jalview/datamodel:
Alignment.java (+5 -5),
AlignmentView.java (changed),
BinarySequence.java (+7 -7),
ColumnSelection.java (changed),
SeqCigar.java (+5 -5),
Sequence.java (+75 -62),
SequenceI.java (+20 -11)
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src/jalview/gui:
AlignViewport.java (+4 -4),
AnnotationLabels.java (+6 -2),
FeatureRenderer.java (+2 -2),
Finder.java (+2 -2),
IdCanvas.java (+2 -4),
Jalview2XML.java (+2 -2),
RedundancyPanel.java (+3 -3),
SequenceFetcher.java (+1 -1),
SequenceRenderer.java (+7 -7),
UserDefinedColours.java (+2 -2)
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src/jalview/io:
AlignFile.java (+5 -5),
AnnotationFile.java (changed),
BLCFile.java (+5 -5),
ClustalFile.java (+7 -7),
DBRefFetcher.java (changed),
FastaFile.java (+5 -5),
FeaturesFile.java (changed),
JnetAnnotationMaker.java (+4 -4),
MSFfile.java (+16 -14),
PIRFile.java (+1 -1),
PfamFile.java (+3 -3),
PileUpfile.java (+9 -9),
VamsasDatastore.java (+36 -36),
WSWUBlastClient.java (+2 -2)
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src/jalview/jbgui:
GFinder.java (+2 -1)
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src/jalview/schemes:
AnnotationColourGradient.java (+5 -5),
Blosum62ColourScheme.java (+6 -8),
ClustalxColourScheme.java (+8 -8),
ColourSchemeI.java (+2 -2),
NucleotideColourScheme.java (+6 -6),
PIDColourScheme.java (+6 -7),
ResidueColourScheme.java (+8 -11),
ResidueProperties.java (+3 -3),
ScoreColourScheme.java (+3 -5),
UserColourScheme.java (+4 -4)
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src/jalview/ws:
JPredClient.java (+16 -16),
JPredThread.java (changed),
MsaWSThread.java (changed)
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jimp
2006-12-04 17:28
#1
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122 lines of code changed in:
-
doc:
AddingGroovySupport.html (new 122)