April 2006 Commit Log

Number of Commits:
119
Number of Active Developers:
2
andrew 2006-04-28 18:07

Helix sizes

12 lines of code changed in:

andrew 2006-04-28 17:38

Make sure end is less than sequence width

3 lines of code changed in:

andrew 2006-04-28 17:38

Group width -1

2 lines of code changed in:

andrew 2006-04-28 17:37

Watch for exceeding width limit

24 lines of code changed in:

andrew 2006-04-28 14:47

If autoCalculate selected, recalculate immediately

5 lines of code changed in:

andrew 2006-04-28 14:42

Back to gray line

6 lines of code changed in:

andrew 2006-04-28 14:38

validCharWidth moved to viewport

31 lines of code changed in:

andrew 2006-04-28 14:26

Annoying little line at end of wrapped alignment

6 lines of code changed in:

andrew 2006-04-28 13:35

validCharWidth checks

36 lines of code changed in:

andrew 2006-04-28 13:34

Edit menu added

87 lines of code changed in:

andrew 2006-04-28 13:34

Add to palette layer

1 lines of code changed in:

andrew 2006-04-28 13:34

Helix glyphs fixed

68 lines of code changed in:

andrew 2006-04-28 13:33

Case sensitive

14 lines of code changed in:

andrew 2006-04-28 13:33

changeCase

26 lines of code changed in:

andrew 2006-04-28 13:32

Helix glyphs drawn correctly

91 lines of code changed in:

andrew 2006-04-28 13:32

Dont select groups on ids

4 lines of code changed in:

andrew 2006-04-28 13:32

Case sensitive

13 lines of code changed in:

andrew 2006-04-28 13:32

Case shifter

62 lines of code changed in:

andrew 2006-04-21 12:19

Alignment compression on middle mouse button

89 lines of code changed in:

andrew 2006-04-21 11:41

Modified sequence selection

9 lines of code changed in:

andrew 2006-04-19 16:58

Multiple views, alignpanels not being used

1 lines of code changed in:

andrew 2006-04-19 15:32

Alignment might not have any annotations

28 lines of code changed in:

andrew 2006-04-18 14:17

-1 from east scale, wrapped alignment

9 lines of code changed in:

andrew 2006-04-13 14:28

showInternalMessage jdk1.5 bug

37 lines of code changed in:

andrew 2006-04-10 16:54

add back in again

0 lines of code changed in:

andrew 2006-04-10 16:30

old image

0 lines of code changed in:

andrew 2006-04-10 16:29

old images

0 lines of code changed in:

andrew 2006-04-10 16:27

New images

0 lines of code changed in:

andrew 2006-04-10 16:16

2.08, not 2.07

11 lines of code changed in:

andrew 2006-04-10 15:53

To export page

144 lines of code changed in:

andrew 2006-04-10 15:52

Links

1 lines of code changed in:

jimp 2006-04-10 15:36

load features/annotations typo.

2 lines of code changed in:

jimp 2006-04-10 15:32

added note about cursor mode disabling the popup menu.

2 lines of code changed in:

jimp 2006-04-10 15:31

typo and explanation for ignore gaps in consensus

3 lines of code changed in:

jimp 2006-04-10 15:29

reworded pad gaps

5 lines of code changed in:

jimp 2006-04-10 15:28

reworded pad gaps.

5 lines of code changed in:

andrew 2006-04-10 15:17

2.08 update

67 lines of code changed in:

jimp 2006-04-10 15:17

put modellerpir in correct place!

45 lines of code changed in:

jimp 2006-04-10 15:16

updated menus and rearranged seqfeatures (again)

48 lines of code changed in:

andrew 2006-04-10 15:15

Displays error line on error

5 lines of code changed in:

jimp 2006-04-10 15:14

fix links to complex html (that don't display) by quoting them
verbatim.

13 lines of code changed in:

andrew 2006-04-10 15:14

Just removing new line character

2 lines of code changed in:

jimp 2006-04-10 15:01

moved Modeller/PIR description to its own home.

7 lines of code changed in:

jimp 2006-04-10 15:00

moved modellerpir to io

0 lines of code changed in:

jimp 2006-04-10 14:59

describing the Modeller/PIR output.

0 lines of code changed in:

jimp 2006-04-10 14:18

Fixed table border and updated restrictions

4 lines of code changed in:

andrew 2006-04-10 14:15

Editing tab

43 lines of code changed in:

jimp 2006-04-10 14:10

added bit about modeller/pir

5 lines of code changed in:

jimp 2006-04-10 14:06

added annotationColouring to whats new and updated IO and cursorMode
(mac os and backspace==delete)

26 lines of code changed in:

andrew 2006-04-10 13:32

del and backspace do the same thing

8 lines of code changed in:

andrew 2006-04-10 12:41

Release Date width

3 lines of code changed in:

jimp 2006-04-10 12:34

extended preamble and added new heading for user defined annotation
instructions.

3 lines of code changed in:

andrew 2006-04-10 12:33

tab name is editing

2 lines of code changed in:

jimp 2006-04-10 12:31

doco

52 lines of code changed in:

jimp 2006-04-10 12:27

doco changes.

82 lines of code changed in:

jimp 2006-04-10 12:21

added 2.08 application version dialog box.

0 lines of code changed in:

jimp 2006-04-10 12:19

feature settings dialog box for jalview 2.08 application

0 lines of code changed in:

andrew 2006-04-10 12:11

Protein desc bug fixed

9 lines of code changed in:

andrew 2006-04-10 12:10

dont need to set - to -

3 lines of code changed in:

andrew 2006-04-10 12:10

Fixed protein desc bug

21 lines of code changed in:

jimp 2006-04-09 19:02

doco writing.

222 lines of code changed in:

andrew 2006-04-07 15:15

Takes popup away from mouseevent, prevents immediate copy

2 lines of code changed in:

andrew 2006-04-07 14:58

No need for vetoablechange

4 lines of code changed in:

andrew 2006-04-07 14:48

Set all gaps to - symbol

20 lines of code changed in:

andrew 2006-04-07 13:57

padGaps set in preferences

4 lines of code changed in:

andrew 2006-04-07 13:52

Padgaps pref set

1 lines of code changed in:

andrew 2006-04-07 13:51

ModellerOutput set in preferences

60 lines of code changed in:

andrew 2006-04-07 12:27

Autocalculate consensus set in preferences

17 lines of code changed in:

andrew 2006-04-07 12:27

Scroll cursor wrapped alignment

73 lines of code changed in:

andrew 2006-04-07 11:05

+1 error in group edit all sequences

3 lines of code changed in:

andrew 2006-04-07 10:36

remove new line in alquality

1 lines of code changed in:

jimp 2006-04-07 10:21

added full keyset for cursorMode

12 lines of code changed in:

andrew 2006-04-07 09:23

Must check consensus length if autocalculate off

1 lines of code changed in:

jimp 2006-04-06 18:02

added cursorMode feature page and rearranged keystrokes documentation.

113 lines of code changed in:

andrew 2006-04-06 12:11

Hide ref to HiddenRegion

3 lines of code changed in:

jimp 2006-04-06 10:41

removed dross, added a safety check to buildextclients and added references to docs/building.html

24 lines of code changed in:

andrew 2006-04-06 10:24

Must copy feature settings from one frame to another as they are not attached ot the dataset

26 lines of code changed in:

andrew 2006-04-05 17:40

Maintain feature order

7 lines of code changed in:

andrew 2006-04-05 16:53

Save annotationColours

141 lines of code changed in:

andrew 2006-04-05 16:52

Public get methods

2 lines of code changed in:

andrew 2006-04-05 16:52

public get methods

24 lines of code changed in:

andrew 2006-04-05 16:50

Save graph threshold and annotation colours

46 lines of code changed in:

andrew 2006-04-05 13:30

2.08 updates

10 lines of code changed in:

andrew 2006-04-05 12:41

Order of menuitems

1 lines of code changed in:

andrew 2006-04-05 12:41

Turn off validation for speed

3 lines of code changed in:

andrew 2006-04-05 12:40

No need for minorSpacing

0 lines of code changed in:

andrew 2006-04-05 12:40

Shift also for group editing

5 lines of code changed in:

andrew 2006-04-05 12:39

Padgap history

3 lines of code changed in:

andrew 2006-04-05 12:38

Note on build target being usage

4 lines of code changed in:

andrew 2006-04-05 12:37

Default raget is :usage

43 lines of code changed in:

andrew 2006-04-05 12:01

2.08 update

22 lines of code changed in:

andrew 2006-04-04 18:18

2.08 updates

5 lines of code changed in:

andrew 2006-04-04 18:06

Modified for 2.08

236 lines of code changed in:

andrew 2006-04-04 18:06

New files

112 lines of code changed in:

andrew 2006-04-04 14:09

Draw threshold over graph

26 lines of code changed in:

andrew 2006-04-04 13:53

loadDataFile is public

3 lines of code changed in:

andrew 2006-04-04 13:53

Add annoations from the command line

25 lines of code changed in:

andrew 2006-04-04 11:58

Overview follows cursor movement

3 lines of code changed in:

andrew 2006-04-04 11:50

Set keyboard numbers to null if esc pressed

5 lines of code changed in:

andrew 2006-04-04 11:47

Keyboard editing added to applet

725 lines of code changed in:

andrew 2006-04-04 10:38

set current tree once the tree is prepared

4 lines of code changed in:

andrew 2006-04-04 10:37

Jalview2XML does not use static load

6 lines of code changed in:

andrew 2006-04-04 10:37

Pad gaps removes excess gaps

26 lines of code changed in:

andrew 2006-04-04 10:36

Jalview2XML does not use static load

1 lines of code changed in:

andrew 2006-04-04 10:36

Specify com.stevesoft.pat.Regex

1 lines of code changed in:

andrew 2006-04-04 10:34

Autocalculate consensus

44 lines of code changed in:

andrew 2006-04-04 10:33

More keys for editing

31 lines of code changed in:

andrew 2006-04-04 10:33

Get hiddenBoundaryLeft and right

26 lines of code changed in:

andrew 2006-04-04 10:33

Jalview2XML does not use static load anymore

4 lines of code changed in:

andrew 2006-04-04 10:32

Disable hide regions

3 lines of code changed in:

andrew 2006-04-04 10:32

Scrolls if dragged off the screen

100 lines of code changed in:

andrew 2006-04-04 10:31

Keyboard editing

195 lines of code changed in:

andrew 2006-04-04 10:31

Cursor colour

8 lines of code changed in:

andrew 2006-04-04 10:31

Set current tree when ready

6 lines of code changed in:

andrew 2006-04-04 10:31

Allows loading of archive XML

35 lines of code changed in:

andrew 2006-04-04 10:30

For archive only

52 lines of code changed in:

andrew 2006-04-04 10:30

Uses descriptors

0 lines of code changed in:

andrew 2006-04-04 10:29

Binding with descriptors

0 lines of code changed in:

andrew 2006-04-04 10:28

Namespace changes

4 lines of code changed in:

March 2006 »

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