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andrew
2004-11-22 09:42
#57
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4 lines of code changed in:
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src/jalview/gui:
Desktop.java (+4 -2)
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andrew
2004-11-19 17:24
#56
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40 lines of code changed in:
-
src/jalview/gui:
AlignFrame.java (+40 -7)
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andrew
2004-11-19 17:23
#55
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5 lines of code changed in:
-
src/jalview/gui:
AlignmentPanel.java (+5 -30)
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andrew
2004-11-19 17:23
#54
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6 lines of code changed in:
-
src/jalview/gui:
GroupEditor.java (+6 -2)
-
andrew
2004-11-19 17:22
#53
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28 lines of code changed in:
-
src/jalview/gui:
IdCanvas.java (+26 -66),
ScaleCanvas.java (+2 -26)
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andrew
2004-11-19 17:21
#52
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26 lines of code changed in:
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src/jalview/gui:
SeqPanel.java (+26 -9)
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andrew
2004-11-19 17:21
#51
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6 lines of code changed in:
-
src/jalview/gui:
SequenceRenderer.java (+6 -3)
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andrew
2004-11-19 17:20
#50
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1 lines of code changed in:
-
src/jalview/jbgui:
GAlignFrame.java (+1 -2)
-
andrew
2004-11-18 18:46
#49
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0 lines of code changed in:
-
src/jalview/gui:
BlockRenderer.java (del),
CpGRenderer.java (del),
FeatureRenderer.java (del),
GraphRenderer.java (del)
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andrew
2004-11-18 18:43
#48
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1274 lines of code changed in:
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src/MCview:
Atom.java (new 52),
Bond.java (new 65),
Bond.jn (new),
Bond.jsave (new),
MCMatrix.java (new 143),
PDBChain.java (new 261),
PDBfile.java (new 137),
Residue.java (new 28),
Zsort.java (new 50),
myAtom.java (new 29),
rotCanvas.java (new 509)
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andrew
2004-11-18 18:42
#47
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0 lines of code changed in:
-
src/jalview/schemes:
ConservationColourScheme.java (-1)
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andrew
2004-11-18 18:42
#46
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30 lines of code changed in:
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src/jalview/jbgui:
GAlignFrame.java (+30 -15)
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andrew
2004-11-18 18:41
#45
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2 lines of code changed in:
-
src/jalview/gui:
UserDefinedColours.java (+2 -2)
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andrew
2004-11-18 18:41
#44
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18 lines of code changed in:
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src/jalview/gui:
ScaleCanvas.java (+18 -16)
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andrew
2004-11-18 18:40
#43
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5 lines of code changed in:
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src/jalview/gui:
IdCanvas.java (+5 -2)
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andrew
2004-11-18 18:39
#42
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0 lines of code changed in:
-
src/jalview/gui:
DrawableSequence.java (-2)
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andrew
2004-11-18 18:38
#41
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109 lines of code changed in:
-
src/jalview/gui:
AlignmentPanel.java (+109 -1)
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andrew
2004-11-18 18:38
#40
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61 lines of code changed in:
-
src/jalview/gui:
AlignFrame.java (+61 -2)
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andrew
2004-11-18 18:37
#39
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52 lines of code changed in:
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src/jalview/datamodel:
Sequence.java (+52 -1)
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andrew
2004-11-18 18:36
#38
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5 lines of code changed in:
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src/jalview/analysis:
AlignSeq.java (+5 -5)
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andrew
2004-11-16 15:27
#37
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1 lines of code changed in:
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src/jalview/schemes:
ResidueColourScheme.java (+1 -3)
-
andrew
2004-11-16 15:27
#36
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0 lines of code changed in:
-
src/jalview/schemes:
ColourSchemeFactory.java (-2)
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andrew
2004-11-16 15:27
#35
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50 lines of code changed in:
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src/jalview/schemes:
ColourProperties.java (+50 -25)
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andrew
2004-11-16 15:26
#34
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138 lines of code changed in:
-
src/jalview/schemes:
ConservationColourScheme.java (new 138)
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andrew
2004-11-16 15:25
#33
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4 lines of code changed in:
-
src/jalview/jbgui:
GAlignmentPanel.java (+4 -4)
-
andrew
2004-11-16 15:25
#32
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85 lines of code changed in:
-
src/jalview/jbgui:
GAlignFrame.java (+85 -21)
-
andrew
2004-11-16 15:24
#31
-
0 lines of code changed in:
-
src/jalview/jbgui:
GConservationIncrementPanel.java (new),
GGroupEditor.java (new)
-
andrew
2004-11-16 15:24
#30
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10 lines of code changed in:
-
src/jalview/gui:
TreeCanvas.java (+10 -1)
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andrew
2004-11-16 15:23
#29
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13 lines of code changed in:
-
src/jalview/gui:
SequenceRenderer.java (+13 -19)
-
andrew
2004-11-16 15:22
#28
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161 lines of code changed in:
-
src/jalview/gui:
SeqPanel.java (+161 -42)
-
andrew
2004-11-16 15:19
#27
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48 lines of code changed in:
-
src/jalview/gui:
RendererI.java (+1 -1),
SeqCanvas.java (+47 -23)
-
andrew
2004-11-16 15:18
#26
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20 lines of code changed in:
-
src/jalview/gui:
OverviewPanel.java (+20 -1)
-
andrew
2004-11-16 15:17
#25
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18 lines of code changed in:
-
src/jalview/gui:
IdPanel.java (+18 -3)
-
andrew
2004-11-16 15:17
#24
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13 lines of code changed in:
-
src/jalview/gui:
IdCanvas.java (+13 -15)
-
andrew
2004-11-16 15:16
#23
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2 lines of code changed in:
-
src/jalview/gui:
GroupEditor.java (new 2)
-
andrew
2004-11-16 15:16
#22
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14 lines of code changed in:
-
src/jalview/gui:
ConservationIncrementPanel.java (new 14)
-
andrew
2004-11-16 15:16
#21
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4 lines of code changed in:
-
src/jalview/gui:
ColourKey.java (+4 -4)
-
andrew
2004-11-16 15:15
#20
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21 lines of code changed in:
-
src/jalview/gui:
AlignmentPanel.java (+21 -17)
-
andrew
2004-11-16 15:15
#19
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149 lines of code changed in:
-
src/jalview/gui:
AlignFrame.java (+149 -23)
-
andrew
2004-11-16 15:14
#18
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31 lines of code changed in:
-
src/jalview/datamodel:
SequenceGroup.java (+31 -17)
-
andrew
2004-11-16 15:13
#17
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3 lines of code changed in:
-
src/jalview/datamodel:
Sequence.java (+3 -2)
-
andrew
2004-11-16 15:12
#16
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26 lines of code changed in:
-
src/jalview/datamodel:
Alignment.java (+24 -11),
AlignmentI.java (+2)
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andrew
2004-11-16 15:12
#15
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1 lines of code changed in:
-
src/jalview/bin:
Jalview.java (+1 -1)
-
andrew
2004-11-16 15:11
#14
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21 lines of code changed in:
-
src/jalview/analysis:
Conservation.java (+21 -14)
-
andrew
2004-11-04 18:04
#13
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1 lines of code changed in:
-
src/jalview/gui:
SeqPanel.java (+1 -1)
-
andrew
2004-11-04 18:03
#12
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16 lines of code changed in:
-
src/jalview/gui:
SeqCanvas.java (+16 -15)
-
andrew
2004-11-04 18:00
#11
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11 lines of code changed in:
-
src/jalview/gui:
ScorePanel.java (+11 -4)
-
andrew
2004-11-04 17:58
#10
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8 lines of code changed in:
-
src/jalview/gui:
PCAPanel.java (+8)
-
andrew
2004-11-04 17:56
#9
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2 lines of code changed in:
-
src/jalview/gui:
Desktop.java (+2)
-
andrew
2004-11-04 17:55
#8
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43 lines of code changed in:
-
src/jalview/gui:
AlignmentPanel.java (+43 -4)
-
andrew
2004-11-04 17:55
#7
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49 lines of code changed in:
-
src/jalview/gui:
AlignFrame.java (+49 -10)
-
andrew
2004-11-04 17:54
#6
-
168 lines of code changed in:
-
src/jalview/gui:
OverviewPanel.java (new 168)
-
andrew
2004-11-04 17:53
#5
-
17 lines of code changed in:
-
src/jalview/jbgui:
GAlignFrame.java (+17 -6)
-
andrew
2004-11-04 17:51
#4
-
0 lines of code changed in:
-
src/jalview/schemes:
PIDColourScheme.java (-2)
-
andrew
2004-11-02 16:12
#3
-
5 lines of code changed in:
-
src/jalview/gui:
TreeCanvas.java (+5 -6)
-
andrew
2004-11-02 16:11
#2
-
6 lines of code changed in:
-
src/jalview/gui:
IdCanvas.java (+6 -12)
-
andrew
2004-11-02 10:46
#1
-
15099 lines of code changed in:
-
BartonGroupBanner.gif (new),
JalviewX.jpx (new 59)
-
src/jalview/analysis:
AAFrequency.java (new 383),
AlignSeq.java (new 541),
AlignmentSorter.java (new 181),
AlignmentUtil.java (new 156),
CompareAlignments.java (new 84),
Conservation.java (new 185),
NJTree.java (new 667),
PCA.java (new 189)
-
src/jalview/bin:
Cache.java (new 15),
Jalview.java (new 50)
-
src/jalview/datamodel:
Alignment.java (new 453),
AlignmentI.java (new 64),
BinaryNode.java (new 73),
BinarySequence.java (new 109),
FeaturePair.java (new),
Sequence.java (new 157),
SequenceFeature.java (new 197),
SequenceGroup.java (new 107),
SequenceI.java (new 50),
SequenceNode.java (new 21),
SequencePoint.java (new 36)
-
src/jalview/gui:
AlignFrame.java (new 509),
AlignViewport.java (new 346),
AlignmentPanel.java (new 136),
BlockRenderer.java (new),
ColourKey.java (new 5),
ColumnSelection.java (new 26),
CpGRenderer.java (new),
CutAndPasteTransfer.java (new 55),
Desktop.java (new 222),
DrawableSequence.java (new 3),
FeatureRenderer.java (new 85),
GraphRenderer.java (new),
IdCanvas.java (new 231),
IdPanel.java (new 126),
PCAPanel.java (new 112),
PaintRefresher.java (new 35),
PairwiseAlignPanel.java (new 73),
RendererI.java (new 1),
RotatableCanvas.java (new 514),
ScaleCanvas.java (new 26),
ScalePanel.java (new 52),
ScorePanel.java (new 4),
Selection.java (new 12),
SeqCanvas.java (new 359),
SeqPanel.java (new 277),
SequenceRenderer.java (new 130),
TreeCanvas.java (new 382),
TreePanel.java (new 274),
UserDefinedColours.java (new 165)
-
src/jalview/io:
AlignFile.java (new 98),
BLCFile.java (new 153),
ClustalFile.java (new 174),
FastaFile.java (new 139),
FileParse.java (new 46),
FileProperties.java (new),
FormatAdapter.java (new 46),
FormatFactory.java (new),
FormatProperties.java (new 6),
FormatProperty.java (new),
FormatPropertyVector.java (new),
HTMLOutput.java (new 70),
IdentifyFile.java (new 85),
MSFfile.java (new 230),
OutputGenerator.java (new),
PIRFile.java (new 133),
PfamFile.java (new 173),
PostscriptProperties.java (new),
SequenceFeatureSourceI.java (new)
-
src/jalview/jbgui:
GAlignFrame.java (new 935),
GAlignmentPanel.java (new 86),
GColourKey.java (new),
GCutAndPasteTransfer.java (new 82),
GDesktop.java (new 145),
GPCAPanel.java (new 97),
GPairwiseAlignPanel.java (new 53),
GTreePanel.java (new 108),
GUserDefinedColours.java (new 121)
-
src/jalview/math:
Matrix.java (new 572),
RotatableMatrix.java (new 370)
-
src/jalview/schemes:
Blosum62ColourScheme.java (new 63),
BuriedColourScheme.java (new 15),
ClustalxColourScheme.java (new 247),
ColourProperties.java (new 25),
ColourSchemeFactory.java (new 2),
ColourSchemeI.java (new 18),
ColourSchemeProperty.java (new 28),
ColourSchemePropertyVector.java (new),
HelixColourScheme.java (new 35),
HydrophobicColourScheme.java (new 32),
PIDColourScheme.java (new 61),
ResidueColourScheme.java (new 113),
ResidueProperties.java (new 995),
ScoreColourScheme.java (new 63),
SecondaryColourScheme.java (new),
StrandColourScheme.java (new 36),
TaylorColourScheme.java (new 15),
TurnColourScheme.java (new 35),
UserColourScheme.java (new 30),
ZappoColourScheme.java (new 19)
-
src/jalview/util:
BrowserLauncher.java (new 591),
Comparison.java (new 114),
ErrorLog.java (new),
Format.java (new 612),
Format.save (new),
ListenList.java (new),
QuickSort.java (new 91),
WindowUtil.java (new)