-
jprocter
2008-09-26 16:27
#16
-
3 lines of code changed in:
-
utils:
jarunsigner.pl (+3 -2)
-
jprocter
2008-09-24 14:30
#15
-
0 lines of code changed in:
-
src/jalview/io:
AnnotationFile.java (changed)
-
jprocter
2008-09-16 10:29
#14
-
28 lines of code changed in:
-
help/html:
releases.html (+28 -1)
-
jprocter
2008-09-16 10:26
#13
-
2 lines of code changed in:
-
src/jalview/io:
JPredFile.java (+2 -2)
-
jprocter
2008-09-16 10:10
#12
-
4 lines of code changed in:
-
src/jalview/io:
JPredFile.java (+4 -3)
-
jprocter
2008-09-09 12:14
#11
-
0 lines of code changed in:
-
src/jalview/ws:
DasSequenceFeatureFetcher.java (changed)
-
jprocter
2008-09-09 12:14
#10
-
9 lines of code changed in:
-
src/jalview/gui:
IdPanel.java (+9 -14)
-
jprocter
2008-09-09 12:13
#9
-
106 lines of code changed in:
-
src/jalview/gui:
SeqPanel.java (+106 -89)
-
jprocter
2008-09-09 11:10
#8
-
37 lines of code changed in:
-
src/jalview/gui:
IdPanel.java (+37 -7)
-
jprocter
2008-09-09 11:09
#7
-
56 lines of code changed in:
-
src/jalview/appletgui:
IdPanel.java (+56 -6)
-
jprocter
2008-09-09 11:08
#6
-
27 lines of code changed in:
-
src/jalview/appletgui:
APopupMenu.java (+13 -15)
-
src/jalview/gui:
PopupMenu.java (+14 -15)
-
jprocter
2008-09-08 15:47
#5
-
109 lines of code changed in:
-
src/jalview/bin:
Cache.java (+3 -1)
-
src/jalview/gui:
AlignFrame.java (+19 -1),
AlignViewport.java (+42 -2),
IdPanel.java (+3 -3)
-
src/jalview/jbgui:
GAlignFrame.java (+42 -3)
-
jprocter
2008-09-08 14:36
#4
-
41 lines of code changed in:
-
src/jalview/appletgui:
APopupMenu.java (+20)
-
src/jalview/gui:
PopupMenu.java (+21 -1)
-
jprocter
2008-09-04 15:15
#3
-
0 lines of code changed in:
-
jprocter
2008-09-04 14:32
#2
-
73330 lines of code changed in:
-
src/MCview:
AppletPDBCanvas.java (+146 -120),
AppletPDBViewer.java (+40 -32),
Atom.java (+29 -12),
Bond.java (+80 -80),
MCMatrix.java (+175 -171),
PDBCanvas.java (+159 -130),
PDBChain.java (+119 -93),
PDBViewer.java (+82 -74),
PDBfile.java (+31 -34),
Residue.java (+52 -49),
Zsort.java (+73 -75)
-
src/com/stevesoft/pat:
AmpersandRule.java (+30 -29),
Any.java (+55 -55),
BackG.java (+47 -46),
BackMatch.java (+57 -57),
BackRefRule.java (+40 -38),
Backup.java (+54 -52),
BasicStringBufferLike.java (+23 -22),
Bits.java (+3040 -3096),
Boundary.java (+89 -92),
Bracket.java (+88 -87),
CaseMgr.java (+4409 -4407),
ChangeRule.java (+50 -47),
CodeRule.java (+33 -32),
Ctrl.java (+61 -271),
Custom.java (+64 -60),
CustomEndpoint.java (+44 -43),
DirFileRegex.java (+31 -30),
DotMulti.java (+209 -205),
End.java (+71 -70),
FastBracket.java (+256 -256),
FastMulti.java (+169 -171),
FileRegex.java (+323 -293),
Group.java (+77 -75),
LeftRule.java (+31 -30),
Multi.java (+90 -85),
MultiMin.java (+21 -22),
Multi_stage2.java (+157 -156),
NoPattern.java (+33 -33),
NonDirFileRegex.java (+31 -30),
NotImplementedError.java (+16 -17),
NullPattern.java (+37 -37),
NullRule.java (+30 -28),
Or.java (+130 -127),
OrMark.java (+73 -72),
PartialBuffer.java (+109 -106),
Pattern.java (+294 -280),
PatternSub.java (+16 -17),
PopRule.java (+24 -23),
Prop.java (+75 -73),
Pthings.java (+47 -35),
PushRule.java (+50 -47),
RBuffer.java (+52 -47),
Range.java (+97 -98),
RegOpt.java (+448 -469),
RegRes.java (+299 -276),
RegSyntax.java (+30 -29),
RegSyntaxError.java (+40 -42),
Regex.java (+2085 -2029),
RegexReader.java (+309 -325),
RegexTokenizer.java (+171 -161),
RegexWriter.java (+276 -267),
ReplaceRule.java (+400 -398),
Replacer.java (+367 -357),
RightRule.java (+31 -29),
Rthings.java (+68 -52),
RuleHolder.java (+43 -42),
Skip.java (+196 -186),
Skip2.java (+57 -55),
SkipBMH.java (+279 -271),
Skipped.java (+56 -54),
SpecialRule.java (+19 -18),
Start.java (+56 -58),
StrPos.java (+192 -175),
StringBufferLike.java (+92 -90),
StringLike.java (+47 -44),
StringRule.java (+39 -37),
SubMark.java (+32 -31),
TransPat.java (+51 -45),
Transformer.java (+233 -219),
UniValidator.java (+24 -25),
Validator.java (+75 -70),
WantMoreTextReplaceRule.java (+29 -28),
lookAhead.java (+99 -99),
oneChar.java (+76 -75),
parsePerl.java (+373 -379),
patInf.java (+16 -17),
patInt.java (+180 -171)
-
src/com/stevesoft/pat/wrap:
CharArrayBufferWrap.java (+54 -53),
CharArrayWrap.java (+75 -74),
RandomAccessFileWrap.java (+170 -173),
StringBufferWrap.java (+49 -47),
StringWrap.java (+59 -57),
WriterWrap.java (+61 -59)
-
src/ext/vamsas:
IRegistry.java (+19 -9),
IRegistryService.java (+20 -10),
IRegistryServiceLocator.java (+44 -41),
Jpred.java (+25 -14),
JpredService.java (+20 -11),
JpredServiceLocator.java (+43 -41),
JpredSoapBindingStub.java (+125 -99),
MuscleWS.java (+53 -43),
MuscleWSService.java (+48 -38),
MuscleWSServiceLocator.java (+209 -208),
MuscleWSSoapBindingStub.java (+490 -470),
RegistryServiceSoapBindingStub.java (+68 -53),
SeqSearchI.java (changed),
SeqSearchServiceLocator.java (changed),
SeqSearchServiceService.java (changed),
SeqSearchServiceSoapBindingStub.java (changed),
ServiceHandle.java (+63 -59),
ServiceHandles.java (+46 -44)
-
src/jalview/analysis:
AAFrequency.java (+159 -156),
AlignSeq.java (+206 -160),
AlignmentSorter.java (+157 -108),
Conservation.java (+17 -16),
CrossRef.java (changed),
Dna.java (changed),
Finder.java (+61 -30),
NJTree.java (+281 -242),
PCA.java (+252 -239),
ParseProperties.java (+103 -56),
SeqsetUtils.java (+105 -69),
SequenceIdMatcher.java (+258 -246)
-
src/jalview/appletgui:
APopupMenu.java (+184 -173),
AlignFrame.java (+795 -705),
AlignViewport.java (+156 -124),
AlignmentPanel.java (+71 -49),
AnnotationColourChooser.java (+92 -67),
AnnotationLabels.java (+56 -49),
AnnotationPanel.java (+280 -280),
AppletJmol.java (+282 -188),
CutAndPasteTransfer.java (+278 -279),
EditNameDialog.java (+77 -84),
EmbmenuFrame.java (changed),
FeatureRenderer.java (+258 -247),
FeatureSettings.java (+85 -69),
Finder.java (+33 -26),
FontChooser.java (+282 -268),
IdCanvas.java (+62 -72),
IdPanel.java (+42 -35),
IdwidthAdjuster.java (+108 -104),
JVDialog.java (+78 -79),
OverviewPanel.java (+455 -449),
PCAPanel.java (+49 -29),
PaintRefresher.java (+229 -228),
PairwiseAlignPanel.java (+31 -37),
RedundancyPanel.java (+45 -41),
RotatableCanvas.java (+641 -622),
ScalePanel.java (+457 -453),
SeqCanvas.java (+818 -825),
SeqPanel.java (+209 -228),
SequenceRenderer.java (+340 -333),
SliderPanel.java (+377 -363),
Tooltip.java (changed),
TreeCanvas.java (+110 -93),
TreePanel.java (+84 -56),
UserDefinedColours.java (+606 -589)
-
src/jalview/bin:
Cache.java (+179 -153),
Jalview.java (+137 -91),
JalviewLite.java (+29 -23)
-
src/jalview/binding:
Alignment.java (+180 -154),
Annotation.java (+459 -417),
AnnotationElement.java (+305 -276),
Colour.java (+179 -154),
Feature.java (+304 -275),
FeatureSettings.java (+289 -260),
Features.java (+123 -100),
JGroup.java (+760 -724),
JSeq.java (+645 -608),
JalviewModel.java (+233 -205),
JalviewModelSequence.java (+955 -907),
JalviewUserColours.java (+313 -283),
Pdbentry.java (+344 -311),
PdbentryItem.java (+195 -180),
Pdbids.java (+123 -100),
Property.java (+180 -154),
Sequence.java (+123 -100),
SequenceSet.java (+538 -499),
SequenceType.java (+206 -179),
Setting.java (+262 -235),
Tree.java (+843 -805),
UserColourScheme.java (+124 -100),
UserColours.java (+181 -154),
VAMSAS.java (+602 -566),
VamsasModel.java (+122 -100),
Viewport.java (+1463 -1417)
-
src/jalview/commands:
ChangeCaseCommand.java (+21 -16),
CommandI.java (+5 -5),
EditCommand.java (+254 -253),
OrderCommand.java (+10 -10),
RemoveGapColCommand.java (+38 -27),
RemoveGapsCommand.java (+35 -25),
SlideSequencesCommand.java (+24 -31),
TrimRegionCommand.java (+21 -27)
-
src/jalview/datamodel:
AlignedCodonFrame.java (changed),
Alignment.java (+153 -108),
AlignmentAnnotation.java (+187 -132),
AlignmentI.java (+122 -73),
AlignmentOrder.java (+349 -316),
AlignmentView.java (changed),
Annotation.java (+42 -27),
BinaryNode.java (+301 -284),
BinarySequence.java (+24 -24),
CigarArray.java (changed),
CigarBase.java (changed),
CigarCigar.java (changed),
CigarSimple.java (changed),
ColumnSelection.java (changed),
DBRefEntry.java (+112 -76),
DBRefSource.java (changed),
FeatureProperties.java (changed),
GraphLine.java (+13 -7),
HiddenSequences.java (+15 -15),
Mapping.java (+60 -30),
PDBEntry.java (+31 -16),
Provenance.java (+48 -47),
ProvenanceEntry.java (+54 -52),
SearchResults.java (+30 -24),
SeqCigar.java (+207 -163),
Sequence.java (+12 -9),
SequenceFeature.java (+46 -43),
SequenceGroup.java (+134 -96),
SequenceI.java (+123 -80),
SequenceNode.java (+57 -38),
SequencePoint.java (+9 -8),
UniprotEntry.java (+98 -93),
UniprotFile.java (+36 -36),
UniprotProteinName.java (changed),
UniprotSequence.java (+46 -46)
-
src/jalview/datamodel/xdb/embl:
BasePosition.java (+57 -27),
EmblEntry.java (+92 -59),
EmblError.java (+36 -14),
EmblFeature.java (+97 -54),
EmblFeatureLocElement.java (+115 -68),
EmblFeatureLocations.java (+149 -92),
EmblFile.java (+129 -86),
EmblSequence.java (+76 -40),
Qualifier.java (+98 -62)
-
src/jalview/gui:
AlignFrame.java (+1573 -1500),
AlignViewport.java (+1527 -1454),
AlignmentPanel.java (+258 -250),
AnnotationColourChooser.java (+524 -517),
AnnotationExporter.java (changed),
AnnotationLabels.java (+123 -113),
AnnotationPanel.java (+329 -317),
AppJmol.java (+223 -217),
CutAndPasteTransfer.java (+260 -265),
DasSourceBrowser.java (changed),
Desktop.java (+436 -374),
EPSOptions.java (+149 -143),
EditNameDialog.java (+81 -83),
FeatureRenderer.java (+287 -257),
FeatureSettings.java (+324 -264),
Finder.java (+54 -41),
FontChooser.java (+271 -259),
IProgressIndicator.java (changed),
IdCanvas.java (+489 -477),
IdPanel.java (+94 -78),
IdwidthAdjuster.java (+172 -161),
Jalview2XML.java (+263 -203),
Jalview2XML_V1.java (changed),
OOMWarning.java (new),
OverviewPanel.java (+458 -447),
PCAPanel.java (+97 -95),
PaintRefresher.java (+244 -243),
PairwiseAlignPanel.java (+33 -37),
PopupMenu.java (+341 -281),
Preferences.java (+135 -160),
RedundancyPanel.java (+47 -40),
RotatableCanvas.java (+818 -769),
ScalePanel.java (+76 -63),
ScriptWindow.java (+730 -616),
SeqCanvas.java (+198 -184),
SeqPanel.java (+251 -250),
SequenceFetcher.java (+53 -43),
SequenceRenderer.java (+472 -434),
SliderPanel.java (+373 -359),
SplashScreen.java (+69 -56),
TextColourChooser.java (+209 -213),
TreeCanvas.java (+234 -186),
TreePanel.java (+148 -128),
UserDefinedColours.java (+140 -134),
UserQuestionnaireCheck.java (+54 -35),
VamsasApplication.java (+68 -36),
WebserviceInfo.java (+6 -6)
-
src/jalview/io:
AMSAFile.java (+99 -100),
AlignFile.java (+66 -44),
AnnotationFile.java (changed),
AppletFormatAdapter.java (+153 -117),
BLCFile.java (+78 -63),
ClansFile.java (changed),
ClustalFile.java (+28 -28),
DBRefFile.java (changed),
FastaFile.java (+49 -47),
FeaturesFile.java (changed),
FileLoader.java (+43 -34),
FileParse.java (+175 -107),
FormatAdapter.java (+92 -72),
HTMLOutput.java (+384 -389),
IdentifyFile.java (+98 -72),
JPredFile.java (+108 -114),
JalviewFileChooser.java (+44 -51),
JalviewFileFilter.java (+173 -172),
JalviewFileView.java (+111 -111),
JnetAnnotationMaker.java (+72 -69),
MSFfile.java (+66 -64),
MatrixFile.java (changed),
ModellerDescription.java (+408 -391),
NewickFile.java (+29 -29),
PIRFile.java (+21 -22),
PfamFile.java (+20 -22),
PileUpfile.java (+42 -36),
StockholmFile.java (changed),
VamsasAppDatastore.java (+37 -38),
WSWUBlastClient.java (+306 -303)
-
src/jalview/io/vamsas:
DatastoreItem.java (+76 -37),
Dbref.java (+71 -28),
LocalDocSyncObject.java (+53 -15),
Rangetype.java (+89 -42),
Sequencemapping.java (+206 -117),
Tree.java (+32 -10)
-
src/jalview/jbgui:
GAlignFrame.java (+460 -324),
GAlignmentPanel.java (+126 -108),
GCutAndPasteTransfer.java (+232 -212),
GDasSourceBrowser.java (changed),
GDesktop.java (+108 -69),
GFinder.java (+27 -15),
GFontChooser.java (+274 -252),
GPCAPanel.java (+272 -255),
GPairwiseAlignPanel.java (+94 -90),
GPreferences.java (+642 -565),
GSequenceLink.java (+31 -26),
GSliderPanel.java (+208 -194),
GStructureViewer.java (+344 -322),
GTreePanel.java (+263 -248),
GUserDefinedColours.java (+283 -253),
GWebserviceInfo.java (+125 -115)
-
src/jalview/math:
Matrix.java (+857 -851),
RotatableMatrix.java (+344 -331)
-
src/jalview/schemabinding/version2:
AlcodMap.java (changed),
Alcodon.java (changed),
AlcodonFrame.java (changed),
Annotation.java (changed),
AnnotationColours.java (changed),
AnnotationElement.java (changed),
Colour.java (changed),
DBRef.java (changed),
Feature.java (changed),
FeatureSettings.java (changed),
Features.java (changed),
Group.java (changed),
HiddenColumns.java (changed),
JGroup.java (changed),
JSeq.java (changed),
JalviewModel.java (changed),
JalviewModelSequence.java (changed),
JalviewUserColours.java (changed),
MapListFrom.java (changed),
MapListTo.java (changed),
MapListType.java (changed),
Mapping.java (changed),
MappingChoice.java (changed),
OtherData.java (changed),
Pdbentry.java (changed),
PdbentryItem.java (changed),
Pdbids.java (changed),
Property.java (changed),
Sequence.java (changed),
SequenceSet.java (changed),
SequenceSetProperties.java (+183 -155),
SequenceType.java (changed),
Setting.java (changed),
StructureState.java (+413 -383),
ThresholdLine.java (changed),
Tree.java (changed),
UserColourScheme.java (changed),
UserColours.java (changed),
VAMSAS.java (changed),
VamsasModel.java (changed),
Viewport.java (changed)
-
src/jalview/schemabinding/version2/descriptors:
AlcodMapDescriptor.java (changed),
AlcodonDescriptor.java (changed),
AlcodonFrameDescriptor.java (changed),
AnnotationColoursDescriptor.java (changed),
AnnotationDescriptor.java (changed),
AnnotationElementDescriptor.java (changed),
ColourDescriptor.java (changed),
DBRefDescriptor.java (changed),
FeatureDescriptor.java (changed),
FeatureSettingsDescriptor.java (changed),
FeaturesDescriptor.java (changed),
GroupDescriptor.java (changed),
HiddenColumnsDescriptor.java (changed),
JGroupDescriptor.java (changed),
JSeqDescriptor.java (changed),
JalviewModelDescriptor.java (changed),
JalviewModelSequenceDescriptor.java (changed),
JalviewUserColoursDescriptor.java (changed),
MapListFromDescriptor.java (changed),
MapListToDescriptor.java (changed),
MapListTypeDescriptor.java (changed),
MappingChoiceDescriptor.java (changed),
MappingDescriptor.java (changed),
OtherDataDescriptor.java (changed),
PdbentryDescriptor.java (changed),
PdbentryItemDescriptor.java (changed),
PdbidsDescriptor.java (changed),
PropertyDescriptor.java (changed),
SequenceDescriptor.java (changed),
SequenceSetDescriptor.java (changed),
SequenceSetPropertiesDescriptor.java (changed),
SequenceTypeDescriptor.java (changed),
SettingDescriptor.java (changed),
StructureStateDescriptor.java (changed),
ThresholdLineDescriptor.java (changed),
TreeDescriptor.java (changed),
UserColourSchemeDescriptor.java (changed),
UserColoursDescriptor.java (changed),
VAMSASDescriptor.java (changed),
VamsasModelDescriptor.java (changed),
ViewportDescriptor.java (changed)
-
src/jalview/schemes:
AnnotationColourGradient.java (+227 -230),
Blosum62ColourScheme.java (+89 -94),
BuriedColourScheme.java (+52 -52),
ClustalxColourScheme.java (+96 -80),
ColourSchemeI.java (+43 -43),
ColourSchemeProperty.java (+7 -7),
Consensus.java (+18 -14),
HelixColourScheme.java (+35 -36),
HydrophobicColourScheme.java (+52 -52),
NucleotideColourScheme.java (+88 -87),
PIDColourScheme.java (+93 -94),
ResidueColourScheme.java (+281 -271),
ResidueProperties.java (+261 -316),
ScoreColourScheme.java (+126 -121),
ScoreMatrix.java (changed),
StrandColourScheme.java (+52 -52),
TaylorColourScheme.java (+27 -28),
TurnColourScheme.java (+52 -52),
UserColourScheme.java (+18 -19),
ZappoColourScheme.java (+8 -9)
-
src/jalview/structure:
SequenceListener.java (+5 -5),
StructureListener.java (+34 -32),
StructureMapping.java (+99 -100),
StructureSelectionManager.java (+7 -7),
VamsasListener.java (changed)
-
src/jalview/util:
BrowserLauncher.java (+890 -931),
Comparison.java (+236 -226),
DBRefUtils.java (+293 -239),
Format.java (+942 -867),
ImageMaker.java (+186 -190),
MapList.java (+29 -22),
Platform.java (changed),
QuickSort.java (+13 -18),
ShiftList.java (changed),
TableSorter.java (changed),
UrlLink.java (changed)
-
src/jalview/ws:
DBRefFetcher.java (changed),
DasSequenceFeatureFetcher.java (changed),
Discoverer.java (+176 -142),
JPredClient.java (+130 -107),
JPredThread.java (changed),
MsaWSClient.java (+75 -70),
MsaWSThread.java (changed),
SeqSearchWSClient.java (changed),
SeqSearchWSThread.java (changed),
SequenceFetcher.java (changed),
WSClient.java (+61 -32),
WSClientI.java (+13 -10),
WSThread.java (changed)
-
src/jalview/ws/dbsources:
DasSequenceSource.java (changed),
EbiFileRetrievedProxy.java (changed),
EmblCdsSouce.java (changed),
EmblSource.java (changed),
EmblXmlSource.java (changed),
GeneDbSource.java (changed),
Pdb.java (changed),
Pfam.java (changed),
PfamFull.java (changed),
PfamSeed.java (changed),
Uniprot.java (+48 -27),
UnprotName.java (changed)
-
src/jalview/ws/dbsources/das:
DasSequenceSourceListener.java (changed)
-
src/jalview/ws/ebi:
EBIFetchClient.java (changed)
-
src/jalview/ws/seqfetcher:
ASequenceFetcher.java (changed),
DbSourceProxy.java (changed),
DbSourceProxyImpl.java (changed)
-
src/org/biojava/dasobert/das:
DAS_FeatureRetrieve.java (changed),
DAS_Feature_Handler.java (changed),
DAS_Sequence_Handler.java (changed),
FeatureThread.java (changed),
SequenceThread.java (changed)
-
src/org/biojava/dasobert/das2:
Das2Capability.java (changed),
Das2CapabilityImpl.java (changed),
Das2Source.java (changed),
Das2SourceImpl.java (changed),
DasSourceConverter.java (changed)
-
src/org/biojava/dasobert/das2/io:
DAS2SourceHandler.java (changed),
DasSourceReaderImpl.java (changed)
-
src/org/biojava/dasobert/dasregistry:
Das1Source.java (changed),
DasCoordSysComparator.java (changed),
DasCoordinateSystem.java (changed),
DasSource.java (changed),
DasSourceComparator.java (changed)
-
src/org/biojava/dasobert/eventmodel:
AbstractDasEvent.java (changed),
FeatureEvent.java (changed),
FeatureListener.java (changed),
ObjectListener.java (changed),
SequenceEvent.java (changed),
SequenceListener.java (changed)
-
src/org/biojava/dasobert/feature:
AbstractFeatureTrack.java (changed),
AbstractSegment.java (changed),
FeatureComparator.java (changed),
FeatureMapComparator.java (changed),
FeatureTrack.java (changed),
FeatureTrackConverter.java (changed),
FeatureTrackImpl.java (changed),
HistogramFeature.java (changed),
HistogramSegment.java (changed),
Segment.java (changed),
SegmentComparator.java (changed),
SegmentImpl.java (changed)
-
src/org/jibble/epsgraphics:
EpsDocument.java (+267 -266),
EpsException.java (+26 -27),
EpsGraphics2D.java (+1443 -1444)
-
src/uk/ac/ebi/picr/model:
CrossReference.java (changed),
CrossReference_Helper.java (changed),
UPEntry.java (changed),
UPEntry_Helper.java (changed)
-
src/uk/ac/ebi/www:
Data.java (+25 -30),
InputParams.java (+75 -74),
WSFile.java (+25 -30),
WSWUBlast.java (+8 -10),
WSWUBlastService.java (+3 -4),
WSWUBlastServiceLocator.java (+26 -33),
WSWUBlastSoapBindingStub.java (+124 -143)
-
src/uk/ac/ebi/www/picr/AccessionMappingService:
AccessionMapperBindingStub.java (changed),
AccessionMapperInterface.java (changed),
AccessionMapperService.java (changed),
AccessionMapperServiceLocator.java (changed)
-
src/vamsas:
IMsaWS.java (+9 -14)
-
src/vamsas/objects/simple:
Alignment.java (+156 -133),
Alignment_Helper.java (+76 -60),
JpredResult.java (+33 -23),
JpredResult_Helper.java (+31 -25),
MsaResult.java (+132 -119),
MsaResult_Helper.java (+87 -78),
Msfalignment.java (+32 -23),
Msfalignment_Helper.java (+31 -25),
Object.java (+56 -34),
Object_Helper.java (+58 -45),
Result.java (+345 -319),
Result_Helper.java (+124 -100),
Secstructpred.java (+26 -17),
Secstructpred_Helper.java (+30 -24),
SeqSearchResult.java (changed),
SeqSearchResult_Helper.java (changed),
Sequence.java (+120 -98),
SequenceSet.java (+95 -75),
SequenceSet_Helper.java (+64 -50),
Sequence_Helper.java (+70 -55),
WsJobId.java (+116 -94),
WsJobId_Helper.java (+70 -55)
-
jprocter
2008-09-04 14:27
#1
-
132 lines of code changed in:
-
help/html:
jalviewjnlp.html (+19 -19)
-
utils:
.cvsignore (new),
help2Website.java (+113 -95)