use canonical DbSource name in GUI box, and ensure only one instance of DbSourceProxy is presented for each canonical name
7 lines of code changed in:
refactored method for registering instance of a dbSource with the SequenceFetcher from the factory method for creating a dbSource instance
0 lines of code changed in:
quick fix for the new uniprot name schema - description line for retrieved uniprot sequences gets the first recommendedName.fullName string found in the entry.
84 lines of code changed in:
added specific retrieval arguments to SequneceFetcher's main method.
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resolve 1:many mappings for sequence associated annotation to all alignment sequence(s) with same ID
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resolve 1:many mappings from feature sequence ID to alignment sequence(s) with same ID
0 lines of code changed in:
allow findSeq to begin *after* a given sequence in the alignment
34 lines of code changed in:
Sequence label colour stored for each sequence group
664 lines of code changed in:
comment
0 lines of code changed in:
annotation file format updated to take idColour and specify single colour groups with rgb triplets and names
0 lines of code changed in:
Sequence label colour stored for each sequence group
25 lines of code changed in:
User defined colourschemes are automatically generated from colour names or RGB colour triplets
723 lines of code changed in:
Sequence label colour stored for each sequence group
19 lines of code changed in:
prevent exception when no default timeout is specified
7 lines of code changed in:
annotation file format updated to take idColour and specify single colour groups with rgb triplets and names
134 lines of code changed in:
ensure annotationElements in non-graphical annotation objects do not automatically get values
4 lines of code changed in: