April 2010 Commit Log

Number of Commits:
104
Number of Active Developers:
2
ws-dev1 2010-04-30 17:05

2.5 release details

0 lines of code changed in:

jprocter 2010-04-30 16:51

2.5 release notes

819 lines of code changed in:

jprocter 2010-04-30 16:09

get the html header comment right!

11649 lines of code changed in:

jprocter 2010-04-30 15:11

get the html header comment right!

141 lines of code changed in:

jprocter 2010-04-30 15:10

tidying for 2.5 release

1 lines of code changed in:

jprocter 2010-04-30 14:19

patch for bug #59999

6 lines of code changed in:

jprocter 2010-04-30 12:52

doc

630 lines of code changed in:

jprocter 2010-04-30 12:52

sort by length

21 lines of code changed in:

jprocter 2010-04-30 10:39

jalview 2.5 release banner

47 lines of code changed in:

jprocter 2010-04-30 10:29

jalview 2.5 release banner

26256 lines of code changed in:

jprocter 2010-04-30 10:16

classpath for eclipse is shared

4 lines of code changed in:

jprocter 2010-04-30 08:03

2.5 doc

7 lines of code changed in:

jprocter 2010-04-30 08:02

2.5 hidden capabilities

7 lines of code changed in:

jprocter 2010-04-30 08:02

vamsas 0.2 client capabilities

28 lines of code changed in:

jprocter 2010-04-29 17:09

make sure references are intact when group annotation is accessed

6 lines of code changed in:

jprocter 2010-04-29 16:12

highlighting/selecting is application only for 2.5.0 release

1 lines of code changed in:

jprocter 2010-04-29 16:03

2.5 release doc

297 lines of code changed in:

jprocter 2010-04-29 16:03

isAligned assertion (bug 0008144)

30 lines of code changed in:

jprocter 2010-04-29 16:02

property change race condition (bug 0062693) and isAligned assertion (bug 0008144)

3 lines of code changed in:

jprocter 2010-04-29 12:12

hide/show selected region menu entries and key bindings

524 lines of code changed in:

jprocter 2010-04-29 12:12

new selection manipulation method

52 lines of code changed in:

jprocter 2010-04-29 09:51

popup menu toggles between graduated colour and single colour feature style

132 lines of code changed in:

jprocter 2010-04-29 09:50

osx pixel tweak

6 lines of code changed in:

jprocter 2010-04-29 09:45

eclipse source code formatting

269 lines of code changed in:

jprocter 2010-04-29 09:38

share eclipse settings

109 lines of code changed in:

jprocter 2010-04-28 18:01

jog pixels for OSX

3 lines of code changed in:

jprocter 2010-04-28 18:01

osx button colouring issue

25 lines of code changed in:

jprocter 2010-04-28 15:23

jog pixels for OSX

10 lines of code changed in:

jprocter 2010-04-28 15:03

find incrementally searches ID then subsequence matches. Dialog reports number of ID and subsequence matches correctly (bugfix)

46 lines of code changed in:

jprocter 2010-04-28 15:03

find incrementally searches ID then subsequence matches.

28 lines of code changed in:

jprocter 2010-04-28 11:25

excludes

1 lines of code changed in:

jprocter 2010-04-28 11:25

check class versions

166 lines of code changed in:

jprocter 2010-04-28 11:23

2.5 updates...

19 lines of code changed in:

jprocter 2010-04-28 11:23

graduated feature schemes

2 lines of code changed in:

jprocter 2010-04-28 11:22

typo

1 lines of code changed in:

jprocter 2010-04-28 11:22

envision2 service

70 lines of code changed in:

jprocter 2010-04-28 11:21

better ui description

0 lines of code changed in:

jprocter 2010-04-28 11:21

make groups function

31 lines of code changed in:

jprocter 2010-04-28 11:21

graduated feature schemes (with visual indication of thresholding)

45 lines of code changed in:

jprocter 2010-04-28 11:21

group/annotation association, logos, autocalc group annotation and sequence id tooltip

13 lines of code changed in:

jprocter 2010-04-28 11:20

graduated feature schemes (with visual indication of thresholding)

128 lines of code changed in:

jprocter 2010-04-28 11:18

null pointer when double click event occurs without an existing selection (happens when tooltip position has been locked using shift key, and then user double clicks).

6 lines of code changed in:

jprocter 2010-04-28 11:17

make groups from selection

59 lines of code changed in:

jprocter 2010-04-28 11:16

group/annotation association

17 lines of code changed in:

jprocter 2010-04-28 11:15

group/annotation association housekeeping

199 lines of code changed in:

jprocter 2010-04-26 11:00

new applet parameters: heightScale and widthScale

45 lines of code changed in:

jprocter 2010-04-26 10:32

build date output in the About box, and build details output on startup when debug flag is set.

157 lines of code changed in:

jprocter 2010-04-26 10:31

disabled the justify functions for 2.5 release (see bug # 62495 )

4 lines of code changed in:

jprocter 2010-04-23 17:17

upgrade to Vamsas client 0.2

0 lines of code changed in:

jprocter 2010-04-23 16:59

skips any annotation that appears to be identical to existing autogenerated annotation on the alignment.

0 lines of code changed in:

jprocter 2010-04-23 16:11

next attempt for Bug #36198 - appears to work reproducibly

0 lines of code changed in:

jprocter 2010-04-23 16:10

tooltip is not shown for Annotation elements with zero length description

8 lines of code changed in:

jprocter 2010-04-23 16:09

javadoc

6 lines of code changed in:

jprocter 2010-04-23 15:20

thread off a Filechooser instance on startup to make the dialog open quicker later on.

13 lines of code changed in:

jprocter 2010-04-23 13:20

default value boolean parameter getter

22 lines of code changed in:

jprocter 2010-04-23 13:20

fix for bug #8333

8 lines of code changed in:

jprocter 2010-04-23 13:19

fix for bug #62456

2 lines of code changed in:

jprocter 2010-04-23 11:56

ported logo rendering and label fit to column width - but disabled due to 1.1 incompatibility.

117 lines of code changed in:

jprocter 2010-04-23 11:55

ported basic elements of logo and group annotation display, but disabled due to 1.1 incompatibility.

68 lines of code changed in:

jprocter 2010-04-23 11:54

refresh table method

4 lines of code changed in:

jprocter 2010-04-23 11:53

1.1 compatibility

6 lines of code changed in:

jprocter 2010-04-23 11:50

1.1 compatibility and refresh table method

26 lines of code changed in:

jprocter 2010-04-23 11:50

1.1 compatibility

15 lines of code changed in:

jprocter 2010-04-22 15:15

non-positional feature export in gff and features file: bug #54325

60 lines of code changed in:

jprocter 2010-04-22 13:01

feature settings is updated if new features are added and dialog is refreshed on a reload

20 lines of code changed in:

jprocter 2010-04-22 13:00

doc and todo about setting position of new internal frames

3 lines of code changed in:

jprocter 2010-04-22 13:00

ensure there's always a space between ID and feature/descr/dbref list.

2 lines of code changed in:

jprocter 2010-04-16 17:43

patch for bug #36198 - more to follow on Monday.

5 lines of code changed in:

jprocter 2010-04-16 15:32

graduated feature color editing

470 lines of code changed in:

jprocter 2010-04-16 15:31

export graduated feature colors

18 lines of code changed in:

jprocter 2010-04-16 15:31

todo javadoc

6 lines of code changed in:

jprocter 2010-04-16 15:31

default for colourBylabel is false

1 lines of code changed in:

jprocter 2010-04-15 10:20

nullpointer bugfix (another repaint racecondition)

4 lines of code changed in:

jprocter 2010-04-15 10:17

ID tooltip preference settings and doc

35 lines of code changed in:

jprocter 2010-04-14 15:39

dialog box appears in centre of desktop window

3 lines of code changed in:

jprocter 2010-04-14 15:39

todo and disable selection sharing between views on same alignment

4 lines of code changed in:

jprocter 2010-04-14 15:39

remove debug messages. fix order/reverse order issue for sortByFeature

14 lines of code changed in:

jprocter 2010-04-14 15:38

todo and disable selection sharing between views on same alignment

27 lines of code changed in:

jprocter 2010-04-14 15:36

profile visualizations are now logos

134 lines of code changed in:

jprocter 2010-04-14 15:35

fix order/reverse order issue for sortByFeature

21 lines of code changed in:

jprocter 2010-04-14 15:35

profile visualizations are now logos

17 lines of code changed in:

jprocter 2010-04-05 16:56

ensure console contains build details in header

10 lines of code changed in:

jprocter 2010-04-05 16:39

regenerated binding for extensions to XML for 2.5

0 lines of code changed in:

jprocter 2010-04-05 16:38

javadoc, and unimplemented warning for group associated annotation (not shared to vamsas session in 2.5)

9 lines of code changed in:

jprocter 2010-04-05 16:38

unnecessary code

0 lines of code changed in:

jprocter 2010-04-05 16:36

javadoc

5 lines of code changed in:

jprocter 2010-04-05 16:36

Extend XML model for graduated feature colours, group associated manual/auto annotation, consensus profile/histograms, annotation label formatting, viewport highlight follow/select message receive settings. Fix group+ucs recovery bug #0061271

171 lines of code changed in:

jprocter 2010-04-05 16:34

extend XML model for graduated feature colours, group associated manual/auto annotation, consensus profile/histograms, annotation label formatting, viewport highlight follow/select message receive settings

59 lines of code changed in:

jprocter 2010-04-02 15:46

document XML extension

1 lines of code changed in:

jprocter 2010-04-02 15:43

javadoc

4 lines of code changed in:

jprocter 2010-04-02 15:42

made threshold type enumaration into set of constants

3 lines of code changed in:

jprocter 2010-04-02 15:41

load and save graduated feature colours in XML

81 lines of code changed in:

jprocter 2010-04-02 15:41

extended Colour element with additional optional attributes for graduated colour

420 lines of code changed in:

jprocter 2010-04-02 11:35

indicate the database id source associated with the sequences being submitted.

1 lines of code changed in:

jprocter 2010-04-02 11:34

cli length limit

0 lines of code changed in:

jprocter 2010-04-02 11:33

urllength limit and more efficient url construction

28 lines of code changed in:

jprocter 2010-04-02 10:39

avoid occasional null exception

6 lines of code changed in:

jprocter 2010-04-02 10:38

better truncation mechanism

86 lines of code changed in:

jprocter 2010-04-01 17:30

prevent duplicate service submission links

10 lines of code changed in:

jprocter 2010-04-01 17:05

reinstate submission of database Ids as well as sequence Id strings.

37 lines of code changed in:

jprocter 2010-04-01 15:19

refactored copy of groupURL mechanism into new Envision service discovery class.

484 lines of code changed in:

jprocter 2010-04-01 15:18

say which url was a problem when exceptions are raised.

0 lines of code changed in:

jprocter 2010-04-01 15:18

new interface

20 lines of code changed in:

jprocter 2010-04-01 15:17

todo

1 lines of code changed in:

March 2010 »

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