September 2005 Commit Log

Number of Commits:
133
Number of Active Developers:
2
andrew 2005-09-30 18:18

Remove redundancy from Eclipse

8 lines of code changed in:

andrew 2005-09-30 18:18

Restore file before eclipse changes

21 lines of code changed in:

andrew 2005-09-30 18:00

Remove redundancy in Eclipse

223 lines of code changed in:

andrew 2005-09-30 17:55

Remove redundancy in Eclipse

57 lines of code changed in:

andrew 2005-09-29 17:11

Take into account scroll value

2 lines of code changed in:

andrew 2005-09-28 17:54

use lower case home.png

1 lines of code changed in:

andrew 2005-09-28 17:53

Applet frame name

38 lines of code changed in:

andrew 2005-09-28 17:13

Set frame size each applet

6 lines of code changed in:

andrew 2005-09-28 16:39

Remove latestVersion if null

7 lines of code changed in:

andrew 2005-09-28 16:08

2.06

30 lines of code changed in:

andrew 2005-09-28 16:07

Put clip back in

5 lines of code changed in:

andrew 2005-09-28 15:55

Change font

1 lines of code changed in:

andrew 2005-09-28 15:54

More features for PCA

42 lines of code changed in:

andrew 2005-09-28 15:54

Wrap alignment with annotations

633 lines of code changed in:

andrew 2005-09-28 15:53

New params

22 lines of code changed in:

andrew 2005-09-27 15:16

Show labels in wrapped view

80 lines of code changed in:

andrew 2005-09-23 17:18

Draw labels, anti alias

32 lines of code changed in:

andrew 2005-09-23 17:17

Capture output as details

35 lines of code changed in:

andrew 2005-09-23 17:17

Right click copy/paste popup

32 lines of code changed in:

andrew 2005-09-23 17:16

Now an InternalFrame with menus

328 lines of code changed in:

andrew 2005-09-22 17:04

SetAnnotationVisible - ignore if wrapped

6 lines of code changed in:

andrew 2005-09-22 16:53

Create Instance of FormatAdapter

2 lines of code changed in:

andrew 2005-09-22 16:52

Dont calculate conservation for nucleotides

8 lines of code changed in:

andrew 2005-09-22 16:50

isNucleotide

44 lines of code changed in:

andrew 2005-09-22 16:49

Create instance of FormatAdapter

1 lines of code changed in:

andrew 2005-09-22 16:49

Add nucleotide names

37 lines of code changed in:

andrew 2005-09-22 16:49

Display nucleotides

46 lines of code changed in:

andrew 2005-09-22 16:48

Break if regex not found

13 lines of code changed in:

andrew 2005-09-22 16:47

Create instance of FormatAdapter

18 lines of code changed in:

andrew 2005-09-22 14:23

If Mac user hasnt selected file format, give warning

13 lines of code changed in:

andrew 2005-09-22 14:23

Wrap alignment with annotations

190 lines of code changed in:

andrew 2005-09-22 14:21

Check if filefilter is null

5 lines of code changed in:

andrew 2005-09-21 18:09

Jalview

2 lines of code changed in:

andrew 2005-09-21 18:08

Sequences must be aligned before PCA

55 lines of code changed in:

andrew 2005-09-21 18:07

Next active Frame losing focus bug fixed

10 lines of code changed in:

andrew 2005-09-20 15:17

Use gtk icons

24 lines of code changed in:

andrew 2005-09-20 15:17

GTK icons

0 lines of code changed in:

andrew 2005-09-20 15:16

Add carriage return after memory settings

48 lines of code changed in:

andrew 2005-09-20 14:21

Checks end of sequence before drawing text

18 lines of code changed in:

andrew 2005-09-20 14:21

Format label left align

2 lines of code changed in:

andrew 2005-09-20 14:20

Optimise copy image

6 lines of code changed in:

andrew 2005-09-20 14:20

PCAPanel checks viewport selection group

1 lines of code changed in:

andrew 2005-09-20 14:19

PCAPanel checks viewport selection

4 lines of code changed in:

andrew 2005-09-20 14:19

PCAPanel just requires viewport

2 lines of code changed in:

andrew 2005-09-20 14:17

Checks end of sequence before drawing text

17 lines of code changed in:

andrew 2005-09-20 14:17

Help gets bounds from help map file

1 lines of code changed in:

andrew 2005-09-20 14:16

New methods in treePanel

6 lines of code changed in:

andrew 2005-09-20 14:15

Null pointer if user presses shift before anything else

7 lines of code changed in:

andrew 2005-09-20 14:14

Align labels format left

3 lines of code changed in:

andrew 2005-09-20 14:13

Optimise graphics copy object

7 lines of code changed in:

andrew 2005-09-20 14:13

Use selectionGroup to find chosen sequences

4 lines of code changed in:

andrew 2005-09-20 14:13

Make sure fontmetrics is not null

4 lines of code changed in:

andrew 2005-09-19 14:41

Make sure fontmetrics exists for headless state

4 lines of code changed in:

andrew 2005-09-19 14:40

Dont add ServiceListeners if desktop is null

2 lines of code changed in:

andrew 2005-09-19 13:49

Alignment of node labels modified

5 lines of code changed in:

andrew 2005-09-19 13:49

ShowDistances, placeHolders and bootstraps have their own methods

24 lines of code changed in:

andrew 2005-09-16 15:34

Check image is not null in fast paint

2 lines of code changed in:

andrew 2005-09-16 15:34

Set distanceMenu selected true

2 lines of code changed in:

andrew 2005-09-15 15:09

Memory settings added to help

95 lines of code changed in:

andrew 2005-09-15 12:19

Correct date

1 lines of code changed in:

jimp 2005-09-15 12:16

Fixed so job submission and job failure errors are reported to user and server exceptions also generate error and log messages.

21 lines of code changed in:

andrew 2005-09-15 11:53

Copy uses fasta format

1 lines of code changed in:

andrew 2005-09-15 11:53

2.05b

14 lines of code changed in:

andrew 2005-09-15 11:28

Add Uracil as X unknown

2 lines of code changed in:

andrew 2005-09-15 11:08

OptionPane warning for out of memory

18 lines of code changed in:

andrew 2005-09-15 11:08

remove system.out

1 lines of code changed in:

andrew 2005-09-15 11:07

Remove key listener

1 lines of code changed in:

andrew 2005-09-15 10:39

Dont add time to build date

2 lines of code changed in:

andrew 2005-09-15 10:11

Add main-class to jar files

6 lines of code changed in:

andrew 2005-09-15 10:09

Use equalsIgnoreCase

4 lines of code changed in:

andrew 2005-09-15 10:09

Applet has main method, excutable

72 lines of code changed in:

andrew 2005-09-15 10:08

Logger moved to prefs so that class not found error can be handled in main

80 lines of code changed in:

andrew 2005-09-14 17:14

Preferences updated

16 lines of code changed in:

andrew 2005-09-14 16:44

Move bootStrap/distance settings outside thread

11 lines of code changed in:

andrew 2005-09-14 16:43

Add end of consensus test for wrapped edit

7 lines of code changed in:

andrew 2005-09-14 16:43

fullSeqId should follow preference value

1 lines of code changed in:

andrew 2005-09-14 16:42

Make new frame selected

16 lines of code changed in:

andrew 2005-09-14 16:42

Remove system out tests

5 lines of code changed in:

andrew 2005-09-14 16:42

Copy and paste uses FASTA format

33 lines of code changed in:

andrew 2005-09-14 13:41

Call methods in treeCanvas on init

4 lines of code changed in:

andrew 2005-09-14 13:40

offy changes

2 lines of code changed in:

andrew 2005-09-14 13:40

OutOfMemory try catch

31 lines of code changed in:

andrew 2005-09-14 13:20

Use font size, not font height

2 lines of code changed in:

andrew 2005-09-14 12:52

Resize for mac

17 lines of code changed in:

andrew 2005-09-14 12:52

Use getTreeFont instead of getFont

15 lines of code changed in:

andrew 2005-09-14 12:25

add fontname, size and style for trees

3 lines of code changed in:

andrew 2005-09-14 12:24

Font change instead of font size

6 lines of code changed in:

andrew 2005-09-14 12:24

Add Export tab

33 lines of code changed in:

andrew 2005-09-14 12:23

Make button protected

2 lines of code changed in:

andrew 2005-09-14 12:23

use fontchooser to change fonts

12 lines of code changed in:

andrew 2005-09-14 12:22

Center labels

17 lines of code changed in:

andrew 2005-09-14 12:22

Save fonts for trees

28 lines of code changed in:

andrew 2005-09-14 12:22

Change fonts in Treepanel

49 lines of code changed in:

andrew 2005-09-14 12:21

Add header

19 lines of code changed in:

andrew 2005-09-14 12:20

System.gc after outofmemory

12 lines of code changed in:

andrew 2005-09-14 12:20

PCA is in outofmemory try-catch

1 lines of code changed in:

andrew 2005-09-14 12:19

TreeFont added, binding rebuilt

79 lines of code changed in:

andrew 2005-09-13 18:45

Dont respond to mouse movements if alignment wrapped

4 lines of code changed in:

andrew 2005-09-13 18:44

Give focus to textarea on startup

9 lines of code changed in:

andrew 2005-09-13 18:44

EPSOptions added

31 lines of code changed in:

andrew 2005-09-13 18:44

Warn if out of memory

85 lines of code changed in:

andrew 2005-09-13 18:42

EPSOptions added

241 lines of code changed in:

andrew 2005-09-12 18:00

Remove gaps in regions, not char by char

67 lines of code changed in:

andrew 2005-09-12 18:00

Always return true for directories

0 lines of code changed in:

andrew 2005-09-12 17:59

null pointers removed

7 lines of code changed in:

andrew 2005-09-12 17:56

Null pointers removed

4 lines of code changed in:

andrew 2005-09-12 13:27

Dont fastpaint if movement is zero

4 lines of code changed in:

andrew 2005-09-12 13:26

Update overview after change

4 lines of code changed in:

andrew 2005-09-12 13:24

Update overview in alignmentChanged

8 lines of code changed in:

andrew 2005-09-12 13:23

Size checking in drawGraph

23 lines of code changed in:

andrew 2005-09-12 13:23

Overview subsamples alignment

98 lines of code changed in:

andrew 2005-09-08 17:32

Move tree property change to treePanel

1 lines of code changed in:

andrew 2005-09-08 17:31

Only 1 NJtree

22 lines of code changed in:

andrew 2005-09-08 17:08

TreePanel takes viewport

2 lines of code changed in:

andrew 2005-09-08 17:04

REmove unnecessary imports

1 lines of code changed in:

andrew 2005-09-08 17:04

Init PCA in thread

163 lines of code changed in:

andrew 2005-09-08 16:50

If no consensus, disable certain colour options

18 lines of code changed in:

andrew 2005-09-08 16:50

update consensus and conservation are in try catch for out of memory error

105 lines of code changed in:

andrew 2005-09-08 16:49

Optimise switch to fastPaint

29 lines of code changed in:

andrew 2005-09-08 16:48

Correct mouse pressed bug

9 lines of code changed in:

andrew 2005-09-08 16:47

Optimised for wide alignments

266 lines of code changed in:

andrew 2005-09-08 16:47

Load in a thread

191 lines of code changed in:

andrew 2005-09-08 16:46

Make menuitems protected

2 lines of code changed in:

andrew 2005-09-08 16:46

If vconsensus is null, return

4 lines of code changed in:

andrew 2005-09-08 16:45

Add lowercase nucleotides to nucleotideHash

5 lines of code changed in:

jimp 2005-09-05 16:38

More informative error messages.

18 lines of code changed in:

andrew 2005-09-02 09:29

Applet search by residue index fixed

5 lines of code changed in:

andrew 2005-09-01 17:10

Add header to file

55 lines of code changed in:

andrew 2005-09-01 14:44

firePropertyChange if sequences deleted

3 lines of code changed in:

andrew 2005-09-01 14:43

Need reference to mainApplet

9 lines of code changed in:

andrew 2005-09-01 14:20

Use propertyListener for alignment edits

187 lines of code changed in:

andrew 2005-09-01 14:20

Sort by added to preferences

24 lines of code changed in:

andrew 2005-09-01 14:19

No need to recalculate image for font change

13 lines of code changed in:

August 2005 »

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