Feature settings
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Has its own featureRenderer
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Group colours not used
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Associated Data menu item
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Cursor added
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Typo
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fr.transferSettings
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FeatureSettings bug fixed
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Feature added to group search results
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Groups compatibility
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No need to hava SSX as array
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CursoMode added
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Load data file added
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Trim line
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Features added to group Uniprot
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Add check if sequence already exists
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FeaturesGroup added to constructor
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1 too many
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Features added to group search results
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-1 +1 check removed
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1 too many in drawgraph
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Annotation colour scheme added
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Called from AnnotationColourChooser and Feature Settings
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Annotation colours added to applet
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ZSort no longer static
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Has own featurerenderer
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Rearranged text
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Correct reference
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typo
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Reference added
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added example jnlp to memory settings help
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added link to example jnlp file
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example jnlp file for users to edit and save locally
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jnet method description correction.
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Fix for Finn Drablos bug. Must use equals for comparing strings
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historyItem.restore
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HideSequences
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getWidth and getHeight just once
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-1 to drawGraphs
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isVisible and hiddenboundary added
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UserColors not used here
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Hidden Rows
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Reveal
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Faster
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Hide Sequences
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Tooltip for hidden columns
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Hidden column adjustments
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Scrolls when editing
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Gethidden sequences
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HiddenSequence methods
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getHiddenSequences
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Keeps a record of hidden sequences
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Allow loading from Zip files
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Load tree
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CandP takes AlignFrame, not applet
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Fastpaint updates
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CandP takes AlignFrame, not applet
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Check endres when drawing graphs
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Cut and paste may be inserted into Dialog frame
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Fastest implementation so far
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Extra argument false
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Scroll implemented for applet editing
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Selection Group rendering updated
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Reduced arguments for speed
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Can be used for user features
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Add new feature from seqrch results
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Feature rendering in groups
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Out of bounds check
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added description of alignment quality scores and separated
description of conservation calculation from the instructions for
colouring alignments by it.
77 lines of code changed in:
methods for searching DBRef lists
32 lines of code changed in:
fixes bug 0013013 but reveals lack of a 'features retrieved' flag that should be set when a sequence's uniprot record has been retrieved and all its sequence features have been added.
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bug fix for 0013013
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Sequences can have a description
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Features may belong to a feature group
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IdentifyFile should not be static
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Can read from zip file
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Blank space is white
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Reveal All added
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IdentifyFile should not be static
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<= fastPaints hidden columns
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Check for visibleGroup==null
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IdentfyFile should not be static
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RevealAllHiddenColumns
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Allow for hidden columns
104 lines of code changed in:
IdentifyFile should not be static
4 lines of code changed in:
Able to read resources from Zip file
51 lines of code changed in:
IdentifyFile should not be static
88 lines of code changed in:
Blank space is white
2 lines of code changed in:
PASTE is constant in AppletFormatAdapter
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Pack resources in Zip file
11 lines of code changed in:
fixed after refactoring of SequenceFeature[] seq.getSequenceFeatures
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propagate SearchResult object use to MCView's highlighted residue renderer.
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