explicitly grab all permissions for application execution (need feedback on the effect of this on javaws security exceptions)
19 lines of code changed in:
update annotation when group state is changed
2 lines of code changed in:
show group annotation menu entries
39 lines of code changed in:
colour by label prototype flag
18 lines of code changed in:
catch null pointer exception in headless context
7 lines of code changed in:
get consensus sequence and set ignore gaps flag for group consensus row
16 lines of code changed in:
annotation update method synchronises group annotation
133 lines of code changed in:
headless warning messages, prototype group annotation and annotation update method
38 lines of code changed in:
refactored conservation thread, added showgroupannotation flags
45 lines of code changed in:
conservation thread refactored from AlignViewport
84 lines of code changed in:
feature colour by label flag/style
32 lines of code changed in:
headless test
0 lines of code changed in:
todo
0 lines of code changed in:
implement new insert annotation row method and ensure group annotation rows are removed when groups are removed
36 lines of code changed in:
insert annotation at specific position
8 lines of code changed in:
optional sequencegroup ref for annotation row
14 lines of code changed in:
sequence groups carry their own conservation and consensus annotation rows
135 lines of code changed in:
complete alignment annotation row procedure
127 lines of code changed in: