null pointer bugfix
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bugfixed MapList (must be propagated to vamsas version of this class)
442 lines of code changed in:
javadoc and transferAnnotation method
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case insensitive matching of database ids
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case invariant matching of seqeunce feature to sequence id string
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bugfix
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only show bootstrap values if they are valid!
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typo
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javadoc
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added generic method for adding new database proxies by reflection on instance.
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refactored ebi soap client and AbstractSequenceFetcher machinery to their own packages.
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todo for sortbyPID operating on current selection rather than all alignment
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javadoc
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refactor abstract sequence fetching and DBSource machinery to their own package
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crossrefs have properly updated pdbId lists
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javadoc and introduction of dasserver and fetchdas command line arguments.
233 lines of code changed in:
added mechanism to initiate DAS feature fetching programmatically from jalview.bin.Jalview. Various thread safe gui update issues and javadoc.
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public access to static getAlignFrames method.
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public method to indicate if there are progress bars active on this alignment window
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publicly accessible flag to indicate if a registry query thread is in progress
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bugfix for occasional race condition causing exception in swing method for retrieving all desktop windows
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comments
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begun adding string constants for source properties
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javadoc
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end must be greater than blockstart
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initialise treeCanvas before starting loading thread
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fix accidental breakage of annotation panel redraw on horizontal slide
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attempt to make fastPaint method thread safe
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refactored syncing of alignment sequences - still buggy
373 lines of code changed in:
vamsas connects and updates are threaded with a progress bar.
103 lines of code changed in:
updated build with requesttoclose event being raised (more) correctly
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