jga browser string: java/version (arch; os version)
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modified JGA module to report java+version as user agent and concatenate arch+name+version as os string
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1.1 compatibility
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render sequence logo over consensus histogram
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single-click highlights, double click selectes th associated group or sequence for annotation row
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group consensus/conservation calculated from start to end
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viewport setting for displaying sequence logos
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reversed order of addition of group consensus and conservation
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prototype make groups from selection function and shift+ctrl+H to hide everything but selected region.
99 lines of code changed in:
prototype make groups from selection function
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new sortbyPID for specific start/end region
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race condition null pointer bugfix
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bugfix
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todo for 2.5
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null pointer exception bug fix
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commented debug lines indicating calculation progress
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start/stop for per-group consensus calculation
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store symbol profile and extract it for display
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pir format ambiguity and todo regarding 'format override' parameter
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basic implementation of profile display and todos
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todo
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routines for creating groups over an alignment
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asparagine is polar but not charged
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fix feature creation for selected region beyond end of sequence bug: https://mantis.lifesci.dundee.ac.uk/view.php?id=53503
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