doh - stupid jim.
4 lines of code changed in:
utility classes used in build.xml, and a dodgy perl script for
removing the signatures from jars.
32 lines of code changed in:
JavaC target set to 1.4 for proper compilation of 1.5 code.
1 lines of code changed in:
Added a flag to control if the "/<seq_start>-<seq_end>" field of
SequenceI.Name is included in fastA format files. This is used in the
Jemboss client.
11 lines of code changed in:
added a an axis log4j appender property to the jalview.Cache.
7 lines of code changed in:
new libraries for soap bits.
0 lines of code changed in:
fixed the log4j messages.
13 lines of code changed in:
cleaned up some comments and exception messages.
8 lines of code changed in:
Updated version of axis to fix the j1.5 webstart problems.
0 lines of code changed in:
Fixed a sensible default leaf distance (for files where only a few, or no distances are specified).
24 lines of code changed in:
fix printing error
6 lines of code changed in:
new seq selection -1
1 lines of code changed in:
adjustForRemoveLeft / Right added
62 lines of code changed in:
works even if col is 1 residue
4 lines of code changed in:
reads MSF files even if PILEUP is missing
2 lines of code changed in:
drawableSequence removed
6 lines of code changed in:
no longer used
0 lines of code changed in:
secondarycolour not used
0 lines of code changed in:
no longer used
0 lines of code changed in:
add .fasta to save dialog
8 lines of code changed in:
correct wrap alignment scrollbar size
10 lines of code changed in:
resetSeqLimits altered
0 lines of code changed in:
override showSaveDialog to prompt user if file exists
17 lines of code changed in:
put bioinformatics into message
3 lines of code changed in:
drag and drop files into jalview
33 lines of code changed in:
add swing runnable to refresh panel on startup
25 lines of code changed in:
read start end if available
30 lines of code changed in:
altered layout
9 lines of code changed in:
alter vgap
1 lines of code changed in:
identifies more varied blc files
3 lines of code changed in:
blc file reader modified
13 lines of code changed in:
add setValue method
4 lines of code changed in:
fix select group bug
4 lines of code changed in:
new method for outlining groups
66 lines of code changed in:
add outline colour
40 lines of code changed in:
prevent idpanel being to narrow
1 lines of code changed in:
maintain slider values when click on a group
11 lines of code changed in:
hide idwidthadjuster if wrapped
5 lines of code changed in:
add coloursChanging boolean
14 lines of code changed in:
group has outline colour
12 lines of code changed in:
use system l&f
2 lines of code changed in:
Created by jalview
37 lines of code changed in:
correct eps png bug missing last 2 lines
31 lines of code changed in:
darkened image
0 lines of code changed in:
eps and png output
26 lines of code changed in:
remove jpg output
1 lines of code changed in:
save eps and png
67 lines of code changed in:
delete postscript output!!
0 lines of code changed in:
rough JPredService client copied from WebServices project.
455 lines of code changed in:
null point bug fixed
2 lines of code changed in:
various loadTree bits for loading and saving trees.
48 lines of code changed in:
merged Loadtree and EPSfile and changed crlf.
1128 lines of code changed in:
Save tree.
0 lines of code changed in:
Load and Save trees.
52 lines of code changed in:
Tree io modifications, including support for polytomous trees by the
generation of dummy nodes.
217 lines of code changed in:
New constructors for turning NewickFile objects into renderable trees
mapped onto the current set of sequences by matching leafnames to
sequence names (where one string must contain the other, rather than
direct equivalence).
69 lines of code changed in:
add all suffixes to file open
1 lines of code changed in:
png and eps
6 lines of code changed in:
updated with all schemes in 1 table
235 lines of code changed in:
dont' use index at the moment
0 lines of code changed in:
eps output facility
1604 lines of code changed in:
filefilter added
4 lines of code changed in:
make eps, png files, filefilter added
97 lines of code changed in:
remove unused constants
0 lines of code changed in:
use new file filter
3 lines of code changed in:
align suffix updated
15 lines of code changed in:
acknowledge source and modify to take filter
302 lines of code changed in:
new class
118 lines of code changed in:
png and eps output added
22 lines of code changed in:
hide image with mouse released
1 lines of code changed in:
add a border
4 lines of code changed in:
relocation of images
0 lines of code changed in:
moved to resources
0 lines of code changed in:
Newick/New Hampshire tree format parser and generator.
490 lines of code changed in:
version and last modified added
8 lines of code changed in:
checks for last update
32 lines of code changed in:
new image
0 lines of code changed in:
idspacefillerpanel has borderlayout
3 lines of code changed in:
fullid is optional
15 lines of code changed in:
takes into account fullid display
9 lines of code changed in:
new class
61 lines of code changed in:
idwidth is calculated in alignpanel, not idcanvas
10 lines of code changed in:
idwidth is calculated in this panel, not idcanvas
45 lines of code changed in:
view full id name optional
21 lines of code changed in:
uses jalviewfilechooser
7 lines of code changed in:
smaller splashscreen
10 lines of code changed in:
scale bug fixed
4 lines of code changed in:
selection area search bugs fixed
14 lines of code changed in:
uses jalviewfilechooser
11 lines of code changed in:
New class, allows sorting
296 lines of code changed in:
Saves screen size on exit
30 lines of code changed in:
setbackground white
1 lines of code changed in:
initial label width bug might be fixed at last
20 lines of code changed in:
stick with cross platform look and feel!!!
2 lines of code changed in:
set groups visible(false)
1 lines of code changed in:
new hscrollfillpanel
8 lines of code changed in:
use the fileview
1 lines of code changed in:
new class
67 lines of code changed in:
try system look and feel for a change
2 lines of code changed in:
selection removed, now SelectionGroup does same job as id select and residue select
429 lines of code changed in:
new file image
0 lines of code changed in:
fonts added to properties
5 lines of code changed in:
actionlisteners added
36 lines of code changed in:
search and font frames are now internalframes
18 lines of code changed in:
resized scale panel
3 lines of code changed in:
fonts changed as selection made
40 lines of code changed in:
Scale canvas not needed
78 lines of code changed in:
clear selection once group defined
5 lines of code changed in:
clear selection
1 lines of code changed in:
delete chars added
5 lines of code changed in:
clear selection with escape key
1 lines of code changed in:
font chooser added
186 lines of code changed in:
allows deletion of chars, font chooser added
19 lines of code changed in:
allows deletion of chars
8 lines of code changed in:
dont perform blast search at present
2 lines of code changed in:
add lower case residue props
23 lines of code changed in:
fixed interface for PID method.
1 lines of code changed in:
fixed so that alignment percentage ID is used for distance calculation
1 lines of code changed in:
fixed signing bug (also updated to latest javahelp library)
0 lines of code changed in:
more precise methods information in help description.
151 lines of code changed in:
fixed some of the jar/wsdl deployment problems.
81 lines of code changed in:
removed conservation calculation from calculations.
0 lines of code changed in:
Tree fits to window by default
28 lines of code changed in:
getCharwidth directly
18 lines of code changed in:
Dont set paintFlags
0 lines of code changed in:
dont set seqPanel paint flag
0 lines of code changed in:
only set graphics black once at beginning of text
11 lines of code changed in:
dont color gaps in sequence features
5 lines of code changed in:
if resIndex > 19 return color.white
1 lines of code changed in:
Obsolete. Explanation within the conservation colourscheme entry.
0 lines of code changed in: