jalview URL updated and authors in about file
2 lines of code changed in:
Mac osX doesnt like isControlDown, use alt instead
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All optionpane messages must be added to Desktop.desktop
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If screensize is small, setSize to be the screenSize
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Doesn't draw the white box at the end of a line
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Fixed bug in editing by group
75 lines of code changed in:
Hide apply and undo buttons
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Use the isGap method in utils
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Output new alignment bug fixed
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ilen and jlen no longer +1
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Remove redundancy implemented
169 lines of code changed in:
colours are right, but not the conservation bit!!
26 lines of code changed in:
no need to send sequence to determine residue colour
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Added for the moment, only used by ClustalxColourScheme
72 lines of code changed in:
No need to sened sequence to determine residue colour
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isGap method implemented in utils, and optimized
21 lines of code changed in:
isGap method implemented in utils
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GSlider replaces GConservationIncrementPanel
65 lines of code changed in:
no more group editing mode. clustal implemented
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Displays full id with the help of nowrap
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New class
87 lines of code changed in:
ColourScheme no longer requires sequence
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End of GroupEditing, GroupDefiningMode!!!!!
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Register with paintrefresher
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If selection altered, update RubberbandGroup
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All colours added, also sequence menu added
113 lines of code changed in:
Right mouse brings up Popupmenu
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ColourScheme findColour no longer needs sequence
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If selection altered, update Rubberband group also
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REpainting after graph panel setVisible fixed
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SliderPanel added, edit is by mouse click
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Removed, SliderPanel replaces this class
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isGap method added to utils
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Dont try{}catch the findColour method, lets fix this now
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HTML ouput is now identical to onscreen view
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Enable PID menuitem
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PID Colour scheme now operational!
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Add Jims name!
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Getcolours is not needed ????
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Scalepanel has new constructor
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Increment panel must call globalcolour or seqeuncegroup colour
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Allow userdefined colours for groups
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Can now select groups using column selection
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Userdefinedcolours works for groups as well
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Hastable is not used anywhere
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New class for defining groups and selections
520 lines of code changed in:
Copy, cut and move now done via popup menu
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Selection of sequences is continuous
58 lines of code changed in:
Drawing of group and rubberband corrected
27 lines of code changed in:
Sequence selection now done via popup menu
20 lines of code changed in:
must allow for alignment width
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Copy, move and delete now done via Popup menu
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AddOrRemove function added, start and end res fixed
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If groups doesnt contain group, addition is allowed
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Hashtable size must allow for total-start
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Choosing sort again reverses the sort order
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No longer exclusive to SequenceGroups
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Now allows multi coloured HTML output
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Colours set globally in viewport
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Looks to viewportfor global settings
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Addition of rubberband
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Now draws group, rubberband
50 lines of code changed in:
sequence selection modified
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SELECTED IDS COLOURED LIGHT GRAY
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COnservationSelected and rubberband method setup
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Colour scheme new global implementation
165 lines of code changed in:
Colour etc is now globally set
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Check if sequence is in group before adding
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Use cross platform lookandfeel
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Dont use updateResidueView
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Space char added
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remove import of jbgui
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default gap char is -
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wont work at present, renderer is null
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remove splashscreenclosing line
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Preparing for groupselect mode
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av.charWidth is now an int
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send SequenceGroup to renderer
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charWidth is now an int
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Text alignment changes
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Allow operation if no groups exist
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Colourscheme is null
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invalidate and validate after closing splashscreen
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Space added
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Add globalcolourscheme
29 lines of code changed in:
Sort groups bug fixed
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Now has res start, res end
97 lines of code changed in:
default gap char is -. Getting ready for group select mode
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Search on residue position and within selection
29 lines of code changed in:
splashscreen activated
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removed divider from edit menu
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Search menu added
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If search results==null, displaySearch is false
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When closed, highlightSearchResults( null )
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show search results added
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showinternal***dialog
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search function added
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rendergaps(boolean) function added
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showInternalInputDialog
39 lines of code changed in:
Dont render gaps in overview panel
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Brackets moved
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Find routine added
51 lines of code changed in:
Char to string comparison
25 lines of code changed in:
Gapchar is a char, not string
2 lines of code changed in:
Set gap chararcter replaces all existing gap chars
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Modified output to reduce HTML file size
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Find added to edit menu
32 lines of code changed in:
New class
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New function to highlight text search results
31 lines of code changed in:
New classes
210 lines of code changed in:
Space changes
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