February 2008 Commit Log

Number of Commits:

12

Number of Active Developers:

1

jprocter 2008-02-24 20:08 #12

sequenceId is a string, not an integer - allows generation of unlimited unique sequential sequence Ids

49 lines of code changed in:

• src: castor.properties (new)
• src/jalview/binding: Alignment.java (changed), Annotation.java (changed), AnnotationElement.java (changed), Colour.java (changed), Feature.java (changed), FeatureSettings.java (changed), Features.java (changed), JGroup.java (changed), JSeq.java (changed), JalviewModel.java (changed), JalviewModelSequence.java (changed), JalviewUserColours.java (changed), Pdbentry.java (changed), PdbentryItem.java (changed), Pdbids.java (changed), Property.java (changed), Sequence.java (changed), SequenceSet.java (changed), SequenceType.java (changed), Setting.java (changed), Tree.java (changed), UserColourScheme.java (changed), UserColours.java (changed), VAMSAS.java (changed), VamsasModel.java (changed), Viewport.java (changed)
• src/jalview/schemabinding/version2: SequenceSetProperties.java (changed), StructureState.java (changed)
• src/jalview/schemabinding/version2/descriptors: JSeqDescriptor.java (changed)
• src/jalview/schemes: ResidueProperties.java (+49)
• src/uk/ac/ebi/picr/model: CrossReference.java (new), CrossReference_Helper.java (new), UPEntry.java (new), UPEntry_Helper.java (new)
• src/uk/ac/ebi/www/picr/AccessionMappingService: AccessionMapperBindingStub.java (new), AccessionMapperInterface.java (new), AccessionMapperService.java (new), AccessionMapperServiceLocator.java (new)

jprocter 2008-02-24 19:52 #11

sequenceId is a string, not an integer - allows generation of unlimited unique sequential sequence Ids

0 lines of code changed in:

• src/jalview/schemabinding/version2/descriptors: JGroupDescriptor.java (changed)

jprocter 2008-02-22 16:32 #10

sequenceId is a string, not an integer - allows generation of unlimited unique sequential sequence Ids

130 lines of code changed in:

• schemas: jalview.xsd (+2 -2)
• src/jalview/gui: Jalview2XML.java (+128 -55)
• src/jalview/schemabinding/version2: .castor.cdr (changed), JGroup.java (changed), JSeq.java (changed)

jprocter 2008-02-22 16:31 #9

valid format for writing test

15 lines of code changed in:

• src/jalview/io: AppletFormatAdapter.java (+15 -4)

jprocter 2008-02-22 16:31 #8

probably unnecessary optimisation (SequenceGroup.addSequence is probably rate limiting step here)

486 lines of code changed in:

• src/jalview/gui: ScalePanel.java (+486 -483)

jprocter 2008-02-22 16:29 #7

On 'save' menu entry check to see if fileformat is a valid output format and open save as dialog if it isn't.

14 lines of code changed in:

• src/jalview/gui: AlignFrame.java (+14 -5)

jprocter 2008-02-22 16:29 #6

CDS segment index

1 lines of code changed in:

• src/jalview/datamodel/xdb/embl: EmblEntry.java (+1 -1)

jprocter 2008-02-22 16:28 #5

possible fix for stockhom ss-annotation re-creation after it is saved to Jalview project

5 lines of code changed in:

• src/jalview/datamodel: AlignmentAnnotation.java (+5 -2)

jprocter 2008-02-22 16:28 #4

index number for contiguous part of mapped sequence feature

1 lines of code changed in:

• src/jalview/datamodel: Mapping.java (+1 -1)

jprocter 2008-02-22 16:27 #3

javadoc

5 lines of code changed in:

• src/jalview/datamodel: SequenceGroup.java (+5 -5)

jprocter 2008-02-22 15:38 #2

typo for AXISLOGLEVEL constant

5 lines of code changed in:

• src/jalview/bin: Cache.java (+5 -2)

jprocter 2008-02-22 15:37 #1

explicit quote of chaincode in errror message

0 lines of code changed in:

• src/jalview/ws/dbsources: Pdb.java (changed)

January 2008 »